Variant report

Variant	rs11072782
Chromosome Location	chr1:45632528-45632529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11633680	0.96[AFR][1000 genomes]
rs2551416	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2551417	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2551418	0.96[AFR][1000 genomes]
rs28407225	0.94[AFR][1000 genomes]
rs28516819	0.84[AFR][1000 genomes]
rs2879427	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4265777	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs477192	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs526148	0.86[AFR][1000 genomes]
rs554605	0.93[AFR][1000 genomes]
rs557460	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs576052	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58893394	0.80[AFR][1000 genomes]
rs618574	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs618613	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs633239	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs636322	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6495319	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs680342	0.97[AFR][1000 genomes]
rs681603	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs681666	0.93[AFR][1000 genomes]
rs7180788	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7402775	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7403241	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7403622	0.83[AFR][1000 genomes]
rs7495348	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7495551	0.91[AFR][1000 genomes]
rs7495955	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7496144	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7497661	0.81[AFR][1000 genomes]
rs7497953	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs919469	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9796719	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529677	chr1:45179509-45748571	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	424 gene(s)	inside rSNPs	diseases
2	nsv1002026	chr1:45187594-45758048	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	386 gene(s)	inside rSNPs	diseases
3	nsv915644	chr1:45282802-45696079	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
4	nsv498036	chr1:45428030-46050934	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
5	nsv947110	chr1:45627447-45642615	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:45628400-45634800	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links