Variant report

Variant	rs28407225
Chromosome Location	chr15:34189578-34189579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11072782	0.94[AFR][1000 genomes]
rs11633680	0.95[AFR][1000 genomes]
rs2551416	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2551417	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2551418	0.95[AFR][1000 genomes]
rs28516819	0.90[AFR][1000 genomes]
rs2879427	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4265777	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs477192	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs526148	0.91[AFR][1000 genomes]
rs554605	0.92[AFR][1000 genomes]
rs557460	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs576052	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs58893394	0.85[AMR][1000 genomes]
rs618574	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs618613	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs633239	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs636322	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6495319	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs680342	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs681603	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs681666	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7180788	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7402775	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7403241	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7403622	0.82[AFR][1000 genomes]
rs7495348	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7495551	0.91[AFR][1000 genomes]
rs7495955	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7496144	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7497953	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs919469	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9796719	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv568921	chr15:34046635-34247622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1044844	chr15:34065524-34296829	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv903984	chr15:34174066-34238804	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv568922	chr15:34175972-34194586	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34160000-34199400	Weak transcription	Left Ventricle	heart
2	chr15:34186600-34189800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr15:34186800-34190400	Weak transcription	Osteobl	bone
4	chr15:34187000-34190400	Weak transcription	GM12878-XiMat	blood
5	chr15:34189200-34189800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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