Variant report

Variant	rs11073079
Chromosome Location	chr15:35350897-35350898
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10851972	1.00[AMR][1000 genomes]
rs2034969	1.00[AMR][1000 genomes]
rs2034970	1.00[AMR][1000 genomes]
rs2100694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2198224	1.00[AMR][1000 genomes]
rs2339778	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34910854	1.00[AMR][1000 genomes]
rs36098991	1.00[AMR][1000 genomes]
rs4432235	1.00[AMR][1000 genomes]
rs4494491	1.00[AMR][1000 genomes]
rs4494492	0.81[AFR][1000 genomes]
rs4924507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6495721	1.00[AMR][1000 genomes]
rs7164516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7181497	1.00[AMR][1000 genomes]
rs8031850	1.00[AMR][1000 genomes]
rs8037026	1.00[AMR][1000 genomes]
rs898125	1.00[AMR][1000 genomes]
rs930918	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35333400-35353400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:35337400-35361200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:35347000-35352800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr15:35348200-35353600	Weak transcription	NHEK	skin
5	chr15:35349200-35352200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:35350200-35351200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr15:35350200-35351200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr15:35350200-35351400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr15:35350200-35351400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr15:35350200-35351400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr15:35350200-35351400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr15:35350200-35351400	Enhancers	Primary hematopoietic stem cells	blood
13	chr15:35350200-35351600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
14	chr15:35350200-35354200	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr15:35350400-35351200	Enhancers	H1 Cell Line	embryonic stem cell
16	chr15:35350400-35351600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr15:35350600-35351400	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr15:35350800-35351400	Flanking Active TSS	GM12878-XiMat	blood
19	chr15:35350800-35351600	Active TSS	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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