Variant report

Variant	rs2100694
Chromosome Location	chr15:35353595-35353596
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:35352270..35354324-chr15:35354571..35357039,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10851972	1.00[AMR][1000 genomes]
rs11073079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2034969	1.00[AMR][1000 genomes]
rs2034970	1.00[AMR][1000 genomes]
rs2198224	1.00[AMR][1000 genomes]
rs2339778	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34910854	1.00[AMR][1000 genomes]
rs36098991	1.00[AMR][1000 genomes]
rs4432235	1.00[AMR][1000 genomes]
rs4494491	1.00[AMR][1000 genomes]
rs4494492	0.81[AFR][1000 genomes]
rs4924507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6495721	1.00[AMR][1000 genomes]
rs7164516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7181497	1.00[AMR][1000 genomes]
rs8031850	1.00[AMR][1000 genomes]
rs8037026	1.00[AMR][1000 genomes]
rs898125	1.00[AMR][1000 genomes]
rs930918	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35337400-35361200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:35348200-35353600	Weak transcription	NHEK	skin
3	chr15:35350200-35354200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr15:35351600-35354200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr15:35352200-35355400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:35352400-35353600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr15:35352600-35353600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr15:35352800-35353600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr15:35352800-35353600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr15:35352800-35353800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:35352800-35354400	Enhancers	Placenta Amnion	Placenta Amnion
12	chr15:35352800-35355200	Enhancers	GM12878-XiMat	blood
13	chr15:35353000-35353600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr15:35353000-35354200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr15:35353200-35353600	Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr15:35353200-35354000	Enhancers	Placenta	Placenta
17	chr15:35353200-35354200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr15:35353200-35354200	Enhancers	Fetal Stomach	stomach
19	chr15:35353200-35359800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:35353400-35353600	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr15:35353400-35353600	Enhancers	Ovary	ovary
22	chr15:35353400-35353800	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr15:35353400-35354000	Enhancers	H1 Cell Line	embryonic stem cell
24	chr15:35353400-35354200	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr15:35353400-35355000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr15:35353400-35355400	Enhancers	H9 Cell Line	embryonic stem cell

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