Variant report

Variant	rs11073332
Chromosome Location	chr15:38817614-38817615
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11073333	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs11073334	0.90[CHB][hapmap];0.90[CHD][hapmap];0.83[ASN][1000 genomes]
rs11855910	1.00[CEU][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes]
rs7403531	0.90[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs8043085	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949171	chr15:38232548-39033746	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv904085	chr15:38786114-38985513	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1046994	chr15:38806163-39239014	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv525770	chr15:38816833-39084956	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11073332	RASGRP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:38767800-38827400	Weak transcription	Spleen	Spleen
2	chr15:38768000-38823400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:38778800-38819600	Strong transcription	Primary B cells from cord blood	blood
4	chr15:38780600-38818200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr15:38781200-38820600	Strong transcription	Primary T cells from cord blood	blood
6	chr15:38787200-38818200	Weak transcription	Pancreas	Pancrea
7	chr15:38795600-38829400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr15:38797800-38817800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr15:38804000-38841000	Weak transcription	Dnd41	blood
10	chr15:38804400-38827000	Weak transcription	Esophagus	oesophagus
11	chr15:38807600-38823800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr15:38808800-38822200	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr15:38810600-38822400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr15:38812600-38845400	Weak transcription	Fetal Brain Female	brain
15	chr15:38812800-38824400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr15:38813400-38826400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
17	chr15:38814000-38823600	Weak transcription	Brain Anterior Caudate	brain
18	chr15:38814400-38817800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
19	chr15:38814600-38836400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr15:38814800-38818800	Strong transcription	Primary B cells from peripheral blood	blood
21	chr15:38815000-38821400	Strong transcription	Fetal Thymus	thymus
22	chr15:38815000-38825000	Strong transcription	Thymus	Thymus
23	chr15:38815200-38818200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr15:38815200-38818800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr15:38816000-38818400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr15:38816000-38819000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr15:38816000-38819400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
28	chr15:38816400-38818600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr15:38816800-38818600	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr15:38816800-38819000	Strong transcription	Primary T killer memory cells from peripheral blood	blood
31	chr15:38816800-38819400	Weak transcription	Osteobl	bone
32	chr15:38816800-38823800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr15:38816800-38823800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr15:38817000-38818600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr15:38817400-38819200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr15:38817600-38817800	Enhancers	Brain Cingulate Gyrus	brain
37	chr15:38817600-38818200	Strong transcription	GM12878-XiMat	blood

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