Variant report

Variant	rs11855910
Chromosome Location	chr15:38819889-38819890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:38818335..38820661-chr15:38853754..38856224,2	MCF-7	breast:
2	chr15:38819782..38822261-chr15:38854232..38856732,2	MCF-7	breast:
3	chr15:38805698..38808317-chr15:38819543..38821410,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11073332	1.00[CEU][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes]
rs8032939	0.84[CHD][hapmap]
rs8035957	0.84[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949171	chr15:38232548-39033746	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv904085	chr15:38786114-38985513	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1046994	chr15:38806163-39239014	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv525770	chr15:38816833-39084956	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11855910	RASGRP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:38767800-38827400	Weak transcription	Spleen	Spleen
2	chr15:38768000-38823400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:38781200-38820600	Strong transcription	Primary T cells from cord blood	blood
4	chr15:38795600-38829400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr15:38804000-38841000	Weak transcription	Dnd41	blood
6	chr15:38804400-38827000	Weak transcription	Esophagus	oesophagus
7	chr15:38807600-38823800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr15:38808800-38822200	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr15:38810600-38822400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr15:38812600-38845400	Weak transcription	Fetal Brain Female	brain
11	chr15:38812800-38824400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr15:38813400-38826400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
13	chr15:38814000-38823600	Weak transcription	Brain Anterior Caudate	brain
14	chr15:38814600-38836400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr15:38815000-38821400	Strong transcription	Fetal Thymus	thymus
16	chr15:38815000-38825000	Strong transcription	Thymus	Thymus
17	chr15:38816800-38823800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr15:38816800-38823800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:38818200-38821200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr15:38818200-38822400	Weak transcription	GM12878-XiMat	blood
21	chr15:38818400-38820200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr15:38818600-38820000	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr15:38818600-38821600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr15:38818600-38830200	Genic enhancers	Primary T cells fromperipheralblood	blood
25	chr15:38818800-38823000	Weak transcription	Primary B cells from peripheral blood	blood
26	chr15:38819000-38822200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr15:38819200-38820400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr15:38819200-38820600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr15:38819400-38820200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr15:38819400-38820400	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr15:38819400-38821400	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr15:38819400-38824400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:38819400-38824400	Enhancers	Osteobl	bone
34	chr15:38819600-38820000	Weak transcription	Primary B cells from cord blood	blood
35	chr15:38819600-38821000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr15:38819600-38821200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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