Variant report

Variant	rs11074039
Chromosome Location	chr15:92613456-92613457
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10520702	0.87[CEU][hapmap]
rs11074035	0.88[CEU][hapmap]
rs11074036	0.96[CEU][hapmap]
rs1568209	0.88[CEU][hapmap]
rs7170953	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs908652	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs992836	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2757614	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760056	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92609800-92616000	Enhancers	Brain Cingulate Gyrus	brain
2	chr15:92610400-92613800	Enhancers	Brain Hippocampus Middle	brain
3	chr15:92610400-92614200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr15:92610800-92615400	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr15:92610800-92620400	Enhancers	Brain Substantia Nigra	brain
6	chr15:92611000-92613600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr15:92611000-92615200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr15:92611200-92613600	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr15:92611200-92614800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr15:92611200-92615200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:92611400-92613600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:92611400-92613800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:92611600-92614000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr15:92611800-92615200	Enhancers	Left Ventricle	heart
15	chr15:92612000-92613600	Enhancers	HMEC	breast
16	chr15:92612200-92614400	Weak transcription	Fetal Brain Male	brain
17	chr15:92612200-92614800	Weak transcription	Fetal Brain Female	brain
18	chr15:92612200-92616200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr15:92612400-92613600	Flanking Active TSS	GM12878-XiMat	blood
20	chr15:92612400-92615000	Enhancers	Right Ventricle	heart
21	chr15:92612600-92613600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr15:92612600-92613600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:92612600-92613600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr15:92612600-92613600	Flanking Active TSS	Adipose Nuclei	Adipose
25	chr15:92612600-92613600	Flanking Active TSS	A549	lung
26	chr15:92612600-92613600	Flanking Active TSS	NHEK	skin
27	chr15:92612600-92613800	Enhancers	Primary T cells fromperipheralblood	blood
28	chr15:92612600-92613800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr15:92612600-92613800	Enhancers	Stomach Mucosa	stomach
30	chr15:92612800-92613600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr15:92612800-92613600	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr15:92612800-92613600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr15:92612800-92613600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr15:92612800-92613600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr15:92612800-92613600	Flanking Active TSS	Osteobl	bone
36	chr15:92612800-92614200	Weak transcription	Fetal Heart	heart
37	chr15:92612800-92614400	Enhancers	Primary B cells from peripheral blood	blood
38	chr15:92612800-92617400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr15:92613000-92613600	Flanking Active TSS	HSMMtube	muscle
40	chr15:92613000-92613800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
41	chr15:92613000-92614200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr15:92613000-92614200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr15:92613000-92614200	Weak transcription	Gastric	stomach
44	chr15:92613000-92614400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr15:92613000-92614400	Weak transcription	Ovary	ovary
46	chr15:92613000-92617600	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr15:92613000-92617800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr15:92613000-92620600	Weak transcription	Pancreas	Pancrea
49	chr15:92613200-92613600	Flanking Active TSS	Primary hematopoietic stem cells	blood
50	chr15:92613200-92613600	Active TSS	Brain Angular Gyrus	brain

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