Variant report

Variant	rs11074119
Chromosome Location	chr15:93449374-93449375
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:93448445..93452273-chr15:93477513..93479275,3	K562	blood:
2	chr15:93448445..93451648-chr15:93477513..93481560,4	K562	blood:
3	chr15:93368093..93370733-chr15:93448780..93451339,2	K562	blood:
4	chr15:93447178..93449882-chr15:93481801..93484893,3	K562	blood:
5	chr15:93449029..93450557-chr15:93479998..93482780,2	MCF-7	breast:
6	chr15:93333327..93367027-chr15:93419774..93462750,363	K562	blood:
7	chr15:93449371..93451319-chr15:93496331..93498149,2	K562	blood:
8	chr15:93447864..93450359-chr15:93471723..93473623,2	K562	blood:
9	chr15:93448445..93450159-chr15:93483633..93486212,2	MCF-7	breast:
10	chr15:93344712..93371031-chr15:93418700..93467618,365	MCF-7	breast:
11	chr15:93449170..93452167-chr15:93535193..93537648,2	K562	blood:
12	chr15:93375453..93377764-chr15:93448296..93450344,2	MCF-7	breast:
13	chr15:93282638..93284980-chr15:93448208..93449935,2	MCF-7	breast:
14	chr15:93413469..93415304-chr15:93448158..93450085,2	K562	blood:
15	chr15:93448661..93449558-chr16:74777222..74778009,2	Hela-S3	cervix:
16	chr15:93337836..93370220-chr15:93420085..93452591,332	K562	blood:
17	chr15:93345383..93371459-chr15:93416796..93454653,318	MCF-7	breast:
18	chr15:93449272..93449926-chr5:108083974..108084762,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000173575	Chromatin interaction
ENSG00000258922	Chromatin interaction
ENSG00000151422	Chromatin interaction
ENSG00000185442	Chromatin interaction
ENSG00000258527	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10852185	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1143115	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12592113	0.87[ASN][1000 genomes]
rs12594492	0.84[ASN][1000 genomes]
rs12903587	0.82[AMR][1000 genomes]
rs12904071	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12907473	0.86[EUR][1000 genomes]
rs12908968	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1439618	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1439619	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs35782805	0.87[ASN][1000 genomes]
rs3826037	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4146836	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4146837	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7170052	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
5	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
6	nsv1047496	chr15:93412778-93475878	Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
7	nsv1036560	chr15:93413594-93462163	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
8	nsv530847	chr15:93444024-93555676	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
9	nsv917347	chr15:93444094-93586814	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93443200-93449400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr15:93443200-93449800	Active TSS	Right Ventricle	heart
3	chr15:93443200-93450000	Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr15:93443200-93450000	Active TSS	Skeletal Muscle Female	skeletal muscle
5	chr15:93443400-93449800	Active TSS	Psoas Muscle	Psoas
6	chr15:93443400-93450000	Active TSS	Right Atrium	heart
7	chr15:93446200-93450200	Active TSS	Liver	Liver
8	chr15:93446800-93449400	Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr15:93446800-93450400	Active TSS	Stomach Smooth Muscle	stomach
10	chr15:93447400-93450000	Active TSS	K562	blood
11	chr15:93447600-93450600	Weak transcription	Spleen	Spleen
12	chr15:93447800-93449600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
13	chr15:93447800-93449600	Transcr. at gene 5' and 3'	Dnd41	blood
14	chr15:93448000-93449600	Flanking Active TSS	Osteobl	bone
15	chr15:93448000-93449800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
16	chr15:93448000-93449800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
17	chr15:93448000-93449800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
18	chr15:93448000-93449800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
19	chr15:93448000-93450800	Flanking Active TSS	Primary B cells from cord blood	blood
20	chr15:93448000-93451200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr15:93448000-93451400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:93448000-93452000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr15:93448000-93452000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr15:93448000-93452000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr15:93448000-93452000	Flanking Active TSS	Primary T cells from cord blood	blood
26	chr15:93448000-93452000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr15:93448000-93452800	Flanking Active TSS	HUVEC	blood vessel
28	chr15:93448200-93449600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
29	chr15:93448200-93449800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
30	chr15:93448200-93449800	Flanking Active TSS	Adipose Nuclei	Adipose
31	chr15:93448200-93449800	Flanking Active TSS	NHEK	skin
32	chr15:93448200-93451200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr15:93448200-93451200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
34	chr15:93448200-93451200	Flanking Active TSS	Brain Hippocampus Middle	brain
35	chr15:93448200-93451200	Flanking Active TSS	NH-A	brain
36	chr15:93448200-93452200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
37	chr15:93448200-93456600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr15:93448400-93449600	Flanking Active TSS	Brain Germinal Matrix	brain
39	chr15:93448400-93449600	Flanking Active TSS	Colon Smooth Muscle	Colon
40	chr15:93448400-93449600	Flanking Active TSS	HMEC	breast
41	chr15:93448400-93449600	Transcr. at gene 5' and 3'	HSMM	muscle
42	chr15:93448400-93449800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr15:93448400-93450200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr15:93448400-93451200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr15:93448400-93451800	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr15:93448400-93452000	Flanking Active TSS	NHDF-Ad	bronchial
47	chr15:93448600-93449400	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr15:93448600-93449400	Enhancers	Primary B cells from peripheral blood	blood
49	chr15:93448600-93449400	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr15:93448600-93449800	Flanking Active TSS	HepG2	liver

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