Variant report

Variant	rs3826037
Chromosome Location	chr15:93450372-93450373
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:93448445..93452273-chr15:93477513..93479275,3	K562	blood:
2	chr15:93448445..93451648-chr15:93477513..93481560,4	K562	blood:
3	chr15:93368093..93370733-chr15:93448780..93451339,2	K562	blood:
4	chr15:93449029..93450557-chr15:93479998..93482780,2	MCF-7	breast:
5	chr15:93333327..93367027-chr15:93419774..93462750,363	K562	blood:
6	chr15:93449371..93451319-chr15:93496331..93498149,2	K562	blood:
7	chr15:93344712..93371031-chr15:93418700..93467618,365	MCF-7	breast:
8	chr15:93449170..93452167-chr15:93535193..93537648,2	K562	blood:
9	chr15:93337836..93370220-chr15:93420085..93452591,332	K562	blood:
10	chr15:93345383..93371459-chr15:93416796..93454653,318	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000258527	Chromatin interaction
ENSG00000173575	Chromatin interaction
ENSG00000258922	Chromatin interaction
ENSG00000185442	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10852185	0.81[AFR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11074118	0.93[ASN][1000 genomes]
rs11074119	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1143115	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12903587	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12904071	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12906861	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12907473	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12908968	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1439618	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1439619	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34918115	0.86[ASN][1000 genomes]
rs4146836	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4146837	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
5	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
6	nsv1047496	chr15:93412778-93475878	Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
7	nsv1036560	chr15:93413594-93462163	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
8	nsv530847	chr15:93444024-93555676	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
9	nsv917347	chr15:93444094-93586814	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93446800-93450400	Active TSS	Stomach Smooth Muscle	stomach
2	chr15:93447600-93450600	Weak transcription	Spleen	Spleen
3	chr15:93448000-93450800	Flanking Active TSS	Primary B cells from cord blood	blood
4	chr15:93448000-93451200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:93448000-93451400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:93448000-93452000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:93448000-93452000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:93448000-93452000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:93448000-93452000	Flanking Active TSS	Primary T cells from cord blood	blood
10	chr15:93448000-93452000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr15:93448000-93452800	Flanking Active TSS	HUVEC	blood vessel
12	chr15:93448200-93451200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr15:93448200-93451200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
14	chr15:93448200-93451200	Flanking Active TSS	Brain Hippocampus Middle	brain
15	chr15:93448200-93451200	Flanking Active TSS	NH-A	brain
16	chr15:93448200-93452200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
17	chr15:93448200-93456600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:93448400-93451200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr15:93448400-93451800	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr15:93448400-93452000	Flanking Active TSS	NHDF-Ad	bronchial
21	chr15:93448600-93450600	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr15:93448600-93451200	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr15:93448600-93451600	Weak transcription	Colonic Mucosa	Colon
24	chr15:93448600-93451800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr15:93448600-93452000	Weak transcription	Esophagus	oesophagus
26	chr15:93448600-93452000	Weak transcription	Pancreas	Pancrea
27	chr15:93448600-93452200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr15:93448600-93452800	Weak transcription	Lung	lung
29	chr15:93448600-93454000	Enhancers	Placenta Amnion	Placenta Amnion
30	chr15:93448600-93457400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr15:93448600-93459200	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr15:93448800-93450600	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr15:93448800-93450600	Active TSS	Primary T cells fromperipheralblood	blood
34	chr15:93448800-93450600	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr15:93448800-93450800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr15:93448800-93451000	Enhancers	Fetal Intestine Large	intestine
37	chr15:93448800-93451000	Enhancers	Fetal Intestine Small	intestine
38	chr15:93448800-93451000	Weak transcription	Placenta	Placenta
39	chr15:93448800-93451000	Enhancers	Fetal Stomach	stomach
40	chr15:93448800-93451000	Weak transcription	Left Ventricle	heart
41	chr15:93448800-93451400	Enhancers	Brain Cingulate Gyrus	brain
42	chr15:93448800-93451400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr15:93448800-93451600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr15:93448800-93451600	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr15:93448800-93452000	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr15:93448800-93452000	Weak transcription	Aorta	Aorta
47	chr15:93448800-93452000	Weak transcription	Fetal Muscle Trunk	muscle
48	chr15:93448800-93452000	Weak transcription	Ovary	ovary
49	chr15:93448800-93452200	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr15:93448800-93452600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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