Variant report

Variant	rs11078337
Chromosome Location	chr17:16193444-16193445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:16188817..16191161-chr17:16192710..16195262,3	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1029809	0.87[EUR][1000 genomes]
rs10852834	0.90[EUR][1000 genomes]
rs11650427	0.88[EUR][1000 genomes]
rs11650956	0.93[EUR][1000 genomes]
rs11651578	0.95[EUR][1000 genomes]
rs11651955	0.80[EUR][1000 genomes]
rs11653650	0.87[EUR][1000 genomes]
rs11654658	0.93[EUR][1000 genomes]
rs11655325	0.82[EUR][1000 genomes]
rs11656811	0.93[EUR][1000 genomes]
rs11868284	0.95[EUR][1000 genomes]
rs12150564	0.88[EUR][1000 genomes]
rs12936233	0.85[EUR][1000 genomes]
rs12936529	0.90[EUR][1000 genomes]
rs12938397	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12938878	0.91[EUR][1000 genomes]
rs12939078	0.92[EUR][1000 genomes]
rs12945855	0.84[EUR][1000 genomes]
rs12948244	0.82[EUR][1000 genomes]
rs12948905	0.83[EUR][1000 genomes]
rs15739	0.82[EUR][1000 genomes]
rs1963811	0.94[EUR][1000 genomes]
rs2014604	0.82[EUR][1000 genomes]
rs2109262	0.95[EUR][1000 genomes]
rs2324306	0.90[EUR][1000 genomes]
rs2324307	0.95[EUR][1000 genomes]
rs3785620	0.86[EUR][1000 genomes]
rs3785622	0.92[EUR][1000 genomes]
rs3785623	0.83[EUR][1000 genomes]
rs3785625	0.94[EUR][1000 genomes]
rs3785626	0.95[EUR][1000 genomes]
rs4791665	0.83[EUR][1000 genomes]
rs4792728	0.95[EUR][1000 genomes]
rs4792729	0.95[EUR][1000 genomes]
rs4792730	0.83[EUR][1000 genomes]
rs4792731	0.95[EUR][1000 genomes]
rs56326304	0.84[EUR][1000 genomes]
rs62072528	0.87[EUR][1000 genomes]
rs6502498	0.90[EUR][1000 genomes]
rs7210990	0.90[EUR][1000 genomes]
rs7215071	0.86[EUR][1000 genomes]
rs7219687	0.82[EUR][1000 genomes]
rs7225920	0.83[EUR][1000 genomes]
rs7477	1.00[ASN][1000 genomes]
rs8074727	0.95[EUR][1000 genomes]
rs9747114	0.82[EUR][1000 genomes]
rs9890867	1.00[ASN][1000 genomes]
rs9909022	0.88[EUR][1000 genomes]
rs9910148	0.90[EUR][1000 genomes]
rs9914734	0.95[EUR][1000 genomes]
rs9916220	0.87[EUR][1000 genomes]
rs9944524	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
2	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
3	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
5	nsv907715	chr17:16019978-16206540	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
6	nsv907717	chr17:16076898-16239832	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
7	nsv528263	chr17:16097430-16196996	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
8	esv3326983	chr17:16138963-16210147	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	21 gene(s)	inside rSNPs	diseases
9	nsv1063764	chr17:16171649-16662914	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	120 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs11078337	CENPV	cis	Artery Tibial	GTEx
rs11078337	ZSWIM7	cis	Muscle Skeletal	GTEx
rs11078337	TTC19	Cis_1M	lymphoblastoid	RTeQTL
rs11078337	ZSWIM7	Cis_1M	lymphoblastoid	RTeQTL
rs11078337	ADORA2B	cis	Thyroid	GTEx
rs11078337	ADORA2B	cis	Artery Tibial	GTEx
rs11078337	ADORA2B	cis	Muscle Skeletal	GTEx
rs11078337	NCOR1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16166200-16205400	Weak transcription	Brain Hippocampus Middle	brain
2	chr17:16181200-16205400	Weak transcription	Dnd41	blood
3	chr17:16187200-16205200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr17:16188800-16194600	Enhancers	Fetal Intestine Large	intestine
5	chr17:16189400-16216600	Weak transcription	Fetal Brain Female	brain
6	chr17:16189800-16200400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr17:16190000-16194000	Enhancers	Primary T cells fromperipheralblood	blood
8	chr17:16190200-16194000	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr17:16190200-16200800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr17:16190200-16200800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr17:16190200-16200800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr17:16190200-16201000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr17:16190400-16203000	Weak transcription	Left Ventricle	heart
14	chr17:16190600-16193600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr17:16190600-16194200	Enhancers	Fetal Intestine Small	intestine
16	chr17:16190600-16194600	Enhancers	HepG2	liver
17	chr17:16190600-16194800	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr17:16190600-16203000	Weak transcription	Ovary	ovary
19	chr17:16190600-16205000	Weak transcription	Lung	lung
20	chr17:16190600-16205200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr17:16190600-16229600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr17:16190800-16195200	Enhancers	Primary B cells from peripheral blood	blood
23	chr17:16190800-16198000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr17:16190800-16198000	Weak transcription	Gastric	stomach
25	chr17:16190800-16200400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr17:16190800-16200600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr17:16190800-16201000	Weak transcription	Spleen	Spleen
28	chr17:16190800-16203000	Weak transcription	Fetal Muscle Leg	muscle
29	chr17:16190800-16204200	Weak transcription	Brain Anterior Caudate	brain
30	chr17:16190800-16205000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr17:16190800-16205200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr17:16190800-16205200	Weak transcription	NHEK	skin
33	chr17:16190800-16216400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr17:16190800-16220800	Weak transcription	Aorta	Aorta
35	chr17:16191000-16203000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr17:16191200-16200600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr17:16191200-16200800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr17:16191400-16194400	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr17:16191400-16203200	Weak transcription	Fetal Stomach	stomach
40	chr17:16191400-16205200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr17:16191400-16218400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr17:16191400-16219400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr17:16191400-16226000	Weak transcription	HSMMtube	muscle
44	chr17:16191600-16194400	Enhancers	Duodenum Mucosa	Duodenum
45	chr17:16191600-16194600	Enhancers	Primary B cells from cord blood	blood
46	chr17:16191600-16199400	Weak transcription	HMEC	breast
47	chr17:16191600-16200600	Weak transcription	Fetal Lung	lung
48	chr17:16191600-16203200	Weak transcription	Adipose Nuclei	Adipose
49	chr17:16191600-16204000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr17:16191600-16205200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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