Variant report

Variant	rs11082524
Chromosome Location	chr18:43971109-43971110
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:43969322..43971831-chr18:43973623..43976426,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs3911130	0.82[TSI][hapmap]
rs62095720	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62095723	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62095724	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62095726	1.00[ASN][1000 genomes]
rs9951417	0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv576812	chr18:43946837-43976847	Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11082524	C19orf55	trans	parietal	SCAN
rs11082524	PRDM8	trans	parietal	SCAN

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43939400-43976600	Weak transcription	Hela-S3	cervix
2	chr18:43949400-43972600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr18:43956400-43978400	Weak transcription	Liver	Liver
4	chr18:43963000-43972600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr18:43964400-43980800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr18:43967200-43972600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr18:43967600-43971600	Weak transcription	Fetal Brain Male	brain
8	chr18:43967800-43981000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr18:43968000-43980000	Weak transcription	Brain Germinal Matrix	brain
10	chr18:43968200-43972400	Weak transcription	Right Ventricle	heart
11	chr18:43968200-43975800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr18:43968200-43977000	Weak transcription	Adipose Nuclei	Adipose
13	chr18:43968400-43971800	Weak transcription	Fetal Kidney	kidney
14	chr18:43968600-43971200	Weak transcription	Spleen	Spleen
15	chr18:43968600-43971600	Weak transcription	Fetal Lung	lung
16	chr18:43968600-43972400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr18:43968600-43974000	Weak transcription	Left Ventricle	heart
18	chr18:43968800-43972200	Weak transcription	Fetal Stomach	stomach
19	chr18:43968800-43981400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr18:43969200-43972000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr18:43969200-43972800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr18:43969200-43985200	Weak transcription	Right Atrium	heart
23	chr18:43969400-43971200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr18:43969400-43977800	Weak transcription	Fetal Heart	heart
25	chr18:43969600-43971800	Weak transcription	Fetal Brain Female	brain
26	chr18:43970000-43971400	Enhancers	Esophagus	oesophagus
27	chr18:43970000-43973600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr18:43970000-43977200	Weak transcription	Dnd41	blood
29	chr18:43970000-43977800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr18:43970000-43979200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr18:43970400-43974400	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr18:43970800-43972200	Weak transcription	Fetal Muscle Trunk	muscle
33	chr18:43971000-43973200	Strong transcription	Fetal Muscle Leg	muscle

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