Variant report

Variant	rs3911130
Chromosome Location	chr18:43991529-43991530
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11082524	0.82[TSI][hapmap]
rs28367364	0.98[ASN][1000 genomes]
rs28688425	0.99[ASN][1000 genomes]
rs28703931	0.99[ASN][1000 genomes]
rs28708509	0.99[ASN][1000 genomes]
rs4101620	0.97[ASN][1000 genomes]
rs4286190	0.95[JPT][hapmap]
rs4890325	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7243484	0.87[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73953847	0.96[ASN][1000 genomes]
rs9946773	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs9947220	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9950147	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9951417	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9966539	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43981800-43991800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr18:43985000-43995200	Enhancers	Fetal Heart	heart
3	chr18:43985200-43997000	Enhancers	Fetal Muscle Leg	muscle
4	chr18:43985200-43997400	Enhancers	Left Ventricle	heart
5	chr18:43985200-43997800	Enhancers	Right Ventricle	heart
6	chr18:43985200-44000600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr18:43985800-43991800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr18:43986800-43991800	Weak transcription	Brain Angular Gyrus	brain
9	chr18:43987400-43991800	Weak transcription	Ovary	ovary
10	chr18:43987800-43992000	Enhancers	Stomach Smooth Muscle	stomach
11	chr18:43988400-43992400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr18:43988600-43991600	Weak transcription	Placenta	Placenta
13	chr18:43988600-43992000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr18:43988600-43992200	Weak transcription	Aorta	Aorta
15	chr18:43988800-43996400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr18:43989400-43994600	Weak transcription	K562	blood
17	chr18:43989400-43994800	Enhancers	Fetal Muscle Trunk	muscle
18	chr18:43989600-43993400	Enhancers	Right Atrium	heart
19	chr18:43989800-43992200	Weak transcription	Fetal Brain Female	brain
20	chr18:43989800-43999000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr18:43990000-43991800	Enhancers	Psoas Muscle	Psoas
22	chr18:43990200-43992000	Enhancers	Colon Smooth Muscle	Colon
23	chr18:43990200-43993800	Enhancers	Lung	lung
24	chr18:43990200-43994000	Enhancers	Spleen	Spleen
25	chr18:43990200-43995200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr18:43990400-43992000	Weak transcription	Colonic Mucosa	Colon
27	chr18:43990400-43992800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr18:43990600-43991600	Weak transcription	Fetal Brain Male	brain
29	chr18:43990800-43991800	Weak transcription	Brain Germinal Matrix	brain
30	chr18:43990800-43992600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr18:43990800-43994200	Enhancers	Fetal Stomach	stomach
32	chr18:43990800-43995200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr18:43990800-43996000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr18:43991000-43991800	Enhancers	Rectal Smooth Muscle	rectum
35	chr18:43991000-43994400	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr18:43991000-43994400	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr18:43991000-43994400	Enhancers	Fetal Lung	lung
38	chr18:43991000-43994800	Enhancers	Esophagus	oesophagus
39	chr18:43991000-43995000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr18:43991000-43996800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr18:43991000-43997000	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr18:43991200-43992600	Enhancers	Fetal Thymus	thymus
43	chr18:43991200-43993000	Enhancers	HSMMtube	muscle
44	chr18:43991200-43993400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
45	chr18:43991200-43994400	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr18:43991200-43995200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr18:43991200-43996200	Enhancers	H1 Cell Line	embryonic stem cell
48	chr18:43991200-43997000	Enhancers	H9 Cell Line	embryonic stem cell
49	chr18:43991200-43997200	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr18:43991400-43992600	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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