The 2.0 version of rSNPBase

Variant report

Variant rs9947220
Chromosome Location chr18:43990779-43990780
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:43973600-43991400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr18:43981800-43991800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr18:43983200-43991200 Weak transcription H9 Cell Line embryonic stem cell
4 chr18:43985000-43995200 Enhancers Fetal Heart heart
5 chr18:43985200-43997000 Enhancers Fetal Muscle Leg muscle
6 chr18:43985200-43997400 Enhancers Left Ventricle heart
7 chr18:43985200-43997800 Enhancers Right Ventricle heart
8 chr18:43985200-44000600 Enhancers Breast Myoepithelial Primary Cells Breast
9 chr18:43985800-43991800 Enhancers Skeletal Muscle Female skeletal muscle
10 chr18:43986800-43991800 Weak transcription Brain Angular Gyrus brain
11 chr18:43987400-43990800 Weak transcription Brain Anterior Caudate brain
12 chr18:43987400-43991800 Weak transcription Ovary ovary
13 chr18:43987800-43992000 Enhancers Stomach Smooth Muscle stomach
14 chr18:43988200-43991000 Weak transcription Duodenum Smooth Muscle Duodenum
15 chr18:43988200-43991000 Weak transcription Rectal Smooth Muscle rectum
16 chr18:43988200-43991200 Enhancers Skeletal Muscle Male skeletal muscle
17 chr18:43988400-43992400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
18 chr18:43988600-43990800 Weak transcription Fetal Stomach stomach
19 chr18:43988600-43991000 Weak transcription Esophagus oesophagus
20 chr18:43988600-43991600 Weak transcription Placenta Placenta
21 chr18:43988600-43992000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr18:43988600-43992200 Weak transcription Aorta Aorta
23 chr18:43988800-43996400 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
24 chr18:43989200-43991000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
25 chr18:43989400-43994600 Weak transcription K562 blood
26 chr18:43989400-43994800 Enhancers Fetal Muscle Trunk muscle
27 chr18:43989600-43990800 Enhancers Brain Germinal Matrix brain
28 chr18:43989600-43993400 Enhancers Right Atrium heart
29 chr18:43989800-43991200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
30 chr18:43989800-43992200 Weak transcription Fetal Brain Female brain
31 chr18:43989800-43999000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
32 chr18:43990000-43991800 Enhancers Psoas Muscle Psoas
33 chr18:43990200-43992000 Enhancers Colon Smooth Muscle Colon
34 chr18:43990200-43993800 Enhancers Lung lung
35 chr18:43990200-43994000 Enhancers Spleen Spleen
36 chr18:43990200-43995200 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
37 chr18:43990400-43991000 Weak transcription Fetal Lung lung
38 chr18:43990400-43991200 Weak transcription Fetal Thymus thymus
39 chr18:43990400-43992000 Weak transcription Colonic Mucosa Colon
40 chr18:43990400-43992800 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
41 chr18:43990600-43991600 Weak transcription Fetal Brain Male brain

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Last update: Aug 31, 2015