Variant report

Variant	rs73953847
Chromosome Location	chr18:43996642-43996643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs16978555	0.81[AFR][1000 genomes]
rs16978556	0.81[AFR][1000 genomes]
rs28367364	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28688425	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28703931	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28708509	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3911130	0.96[ASN][1000 genomes]
rs4101620	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4286190	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4890325	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55701724	0.81[AFR][1000 genomes]
rs60099048	0.81[AFR][1000 genomes]
rs61257154	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7243484	0.96[ASN][1000 genomes]
rs73953838	0.81[AFR][1000 genomes]
rs73953840	0.81[AFR][1000 genomes]
rs73953841	0.81[AFR][1000 genomes]
rs73953843	0.81[AFR][1000 genomes]
rs73953845	0.84[AFR][1000 genomes]
rs73953846	0.97[AFR][1000 genomes]
rs9946773	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9947220	0.96[ASN][1000 genomes]
rs9950147	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9951417	0.96[ASN][1000 genomes]
rs9966539	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43985200-43997000	Enhancers	Fetal Muscle Leg	muscle
2	chr18:43985200-43997400	Enhancers	Left Ventricle	heart
3	chr18:43985200-43997800	Enhancers	Right Ventricle	heart
4	chr18:43985200-44000600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr18:43989800-43999000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr18:43991000-43996800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr18:43991000-43997000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr18:43991200-43997000	Enhancers	H9 Cell Line	embryonic stem cell
9	chr18:43991200-43997200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr18:43992600-44001600	Weak transcription	Fetal Thymus	thymus
11	chr18:43992800-43998400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr18:43993000-43998400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr18:43993200-43998400	Weak transcription	HMEC	breast
14	chr18:43993400-43997000	Weak transcription	Dnd41	blood
15	chr18:43993400-43998400	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr18:43993400-43998600	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr18:43993600-43997600	Weak transcription	Ovary	ovary
18	chr18:43993600-43998200	Weak transcription	Liver	Liver
19	chr18:43993600-43999000	Weak transcription	Brain Angular Gyrus	brain
20	chr18:43994000-43996800	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr18:43994000-43998400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr18:43994200-43998400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr18:43994200-43998400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr18:43994200-43998400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr18:43994200-43999000	Weak transcription	Brain Germinal Matrix	brain
26	chr18:43994200-44011600	Weak transcription	Fetal Brain Female	brain
27	chr18:43994400-43998400	Weak transcription	Colon Smooth Muscle	Colon
28	chr18:43994800-43998800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr18:43994800-43999000	Weak transcription	Esophagus	oesophagus
30	chr18:43994800-43999200	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr18:43994800-44015400	Weak transcription	Fetal Brain Male	brain
32	chr18:43995000-43998400	Weak transcription	Fetal Lung	lung
33	chr18:43995000-43998400	Weak transcription	Stomach Smooth Muscle	stomach
34	chr18:43995000-43998600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr18:43995000-43999000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr18:43995000-43999000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr18:43995000-43999000	Weak transcription	Lung	lung
38	chr18:43995200-43997000	Enhancers	Fetal Muscle Trunk	muscle
39	chr18:43995200-43998400	Weak transcription	Fetal Heart	heart
40	chr18:43995200-43998800	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr18:43995200-43998800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr18:43995200-43998800	Weak transcription	Fetal Stomach	stomach
43	chr18:43995200-43999000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr18:43995200-43999000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr18:43995200-43999200	Weak transcription	Right Atrium	heart
46	chr18:43995800-44011600	Weak transcription	Thymus	Thymus
47	chr18:43996000-43997400	Weak transcription	Psoas Muscle	Psoas
48	chr18:43996000-43998600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr18:43996200-43998800	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr18:43996400-43996800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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