Variant report

Variant	rs4101620
Chromosome Location	chr18:43995471-43995472
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:43981917..43984385-chr18:43994291..43996366,2	K562	blood:
2	chr18:43932218..43934486-chr18:43993141..43996050,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs28367364	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28688425	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28703931	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28708509	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3911130	0.97[ASN][1000 genomes]
rs4286190	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4890325	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61257154	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7243484	0.97[ASN][1000 genomes]
rs73953847	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9946773	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9947220	0.97[ASN][1000 genomes]
rs9950147	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9951417	0.97[ASN][1000 genomes]
rs9966539	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43985200-43997000	Enhancers	Fetal Muscle Leg	muscle
2	chr18:43985200-43997400	Enhancers	Left Ventricle	heart
3	chr18:43985200-43997800	Enhancers	Right Ventricle	heart
4	chr18:43985200-44000600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr18:43988800-43996400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr18:43989800-43999000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr18:43990800-43996000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr18:43991000-43996800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr18:43991000-43997000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr18:43991200-43996200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr18:43991200-43997000	Enhancers	H9 Cell Line	embryonic stem cell
12	chr18:43991200-43997200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr18:43991400-43996000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr18:43991400-43996200	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr18:43992600-44001600	Weak transcription	Fetal Thymus	thymus
16	chr18:43992800-43998400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr18:43993000-43996400	Weak transcription	Colonic Mucosa	Colon
18	chr18:43993000-43998400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr18:43993200-43998400	Weak transcription	HMEC	breast
20	chr18:43993400-43996000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr18:43993400-43997000	Weak transcription	Dnd41	blood
22	chr18:43993400-43998400	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr18:43993400-43998600	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr18:43993600-43997600	Weak transcription	Ovary	ovary
25	chr18:43993600-43998200	Weak transcription	Liver	Liver
26	chr18:43993600-43999000	Weak transcription	Brain Angular Gyrus	brain
27	chr18:43994000-43996800	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr18:43994000-43998400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr18:43994200-43998400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr18:43994200-43998400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr18:43994200-43998400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr18:43994200-43999000	Weak transcription	Brain Germinal Matrix	brain
33	chr18:43994200-44011600	Weak transcription	Fetal Brain Female	brain
34	chr18:43994400-43996600	Enhancers	Adipose Nuclei	Adipose
35	chr18:43994400-43998400	Weak transcription	Colon Smooth Muscle	Colon
36	chr18:43994800-43996400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr18:43994800-43996600	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr18:43994800-43998800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr18:43994800-43999000	Weak transcription	Esophagus	oesophagus
40	chr18:43994800-43999200	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr18:43994800-44015400	Weak transcription	Fetal Brain Male	brain
42	chr18:43995000-43996400	Enhancers	Spleen	Spleen
43	chr18:43995000-43996400	Weak transcription	K562	blood
44	chr18:43995000-43998400	Weak transcription	Fetal Lung	lung
45	chr18:43995000-43998400	Weak transcription	Stomach Smooth Muscle	stomach
46	chr18:43995000-43998600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr18:43995000-43999000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr18:43995000-43999000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr18:43995000-43999000	Weak transcription	Lung	lung
50	chr18:43995200-43995800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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