Variant report

Variant	rs61257154
Chromosome Location	chr18:43998304-43998305
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:43997593..44000218-chr18:44002341..44004552,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs28367364	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28688425	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28703931	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28708509	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4101620	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4286190	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4890325	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73953847	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9946773	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9950147	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9966539	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43985200-44000600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr18:43989800-43999000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr18:43992600-44001600	Weak transcription	Fetal Thymus	thymus
4	chr18:43992800-43998400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr18:43993000-43998400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr18:43993200-43998400	Weak transcription	HMEC	breast
7	chr18:43993400-43998400	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr18:43993400-43998600	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr18:43993600-43999000	Weak transcription	Brain Angular Gyrus	brain
10	chr18:43994000-43998400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr18:43994200-43998400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr18:43994200-43998400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr18:43994200-43998400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr18:43994200-43999000	Weak transcription	Brain Germinal Matrix	brain
15	chr18:43994200-44011600	Weak transcription	Fetal Brain Female	brain
16	chr18:43994400-43998400	Weak transcription	Colon Smooth Muscle	Colon
17	chr18:43994800-43998800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr18:43994800-43999000	Weak transcription	Esophagus	oesophagus
19	chr18:43994800-43999200	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr18:43994800-44015400	Weak transcription	Fetal Brain Male	brain
21	chr18:43995000-43998400	Weak transcription	Fetal Lung	lung
22	chr18:43995000-43998400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr18:43995000-43998600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr18:43995000-43999000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr18:43995000-43999000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr18:43995000-43999000	Weak transcription	Lung	lung
27	chr18:43995200-43998400	Weak transcription	Fetal Heart	heart
28	chr18:43995200-43998800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr18:43995200-43998800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr18:43995200-43998800	Weak transcription	Fetal Stomach	stomach
31	chr18:43995200-43999000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr18:43995200-43999000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr18:43995200-43999200	Weak transcription	Right Atrium	heart
34	chr18:43995800-44011600	Weak transcription	Thymus	Thymus
35	chr18:43996000-43998600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr18:43996200-43998800	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr18:43996400-43998800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr18:43996400-43999000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr18:43996400-43999200	Weak transcription	Spleen	Spleen
40	chr18:43996600-43998600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr18:43996600-43998600	Weak transcription	Adipose Nuclei	Adipose
42	chr18:43996800-43998600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr18:43996800-43998800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr18:43997000-43998600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr18:43997000-43998800	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr18:43997000-43999000	Weak transcription	Fetal Muscle Trunk	muscle
47	chr18:43997200-43999000	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr18:43997400-43998400	Weak transcription	Dnd41	blood
49	chr18:43997400-43998600	Weak transcription	K562	blood
50	chr18:43997400-43999200	Weak transcription	Left Ventricle	heart

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