Variant report

Variant	rs4890325
Chromosome Location	chr18:43993864-43993865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:43932218..43934486-chr18:43993141..43996050,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs28367364	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28688425	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28703931	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28708509	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3911130	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4101620	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4286190	1.00[CEU][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61257154	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7243484	0.95[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs73953847	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9946773	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9947220	0.97[ASN][1000 genomes]
rs9950147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9951417	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9966539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43985000-43995200	Enhancers	Fetal Heart	heart
2	chr18:43985200-43997000	Enhancers	Fetal Muscle Leg	muscle
3	chr18:43985200-43997400	Enhancers	Left Ventricle	heart
4	chr18:43985200-43997800	Enhancers	Right Ventricle	heart
5	chr18:43985200-44000600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr18:43988800-43996400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr18:43989400-43994600	Weak transcription	K562	blood
8	chr18:43989400-43994800	Enhancers	Fetal Muscle Trunk	muscle
9	chr18:43989800-43999000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr18:43990200-43994000	Enhancers	Spleen	Spleen
11	chr18:43990200-43995200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr18:43990800-43994200	Enhancers	Fetal Stomach	stomach
13	chr18:43990800-43995200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr18:43990800-43996000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr18:43991000-43994400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr18:43991000-43994400	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr18:43991000-43994400	Enhancers	Fetal Lung	lung
18	chr18:43991000-43994800	Enhancers	Esophagus	oesophagus
19	chr18:43991000-43995000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr18:43991000-43996800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr18:43991000-43997000	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr18:43991200-43994400	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr18:43991200-43995200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr18:43991200-43996200	Enhancers	H1 Cell Line	embryonic stem cell
25	chr18:43991200-43997000	Enhancers	H9 Cell Line	embryonic stem cell
26	chr18:43991200-43997200	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr18:43991400-43994800	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr18:43991400-43996000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr18:43991400-43996200	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr18:43991600-43994000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr18:43991600-43994800	Enhancers	Fetal Brain Male	brain
32	chr18:43991800-43994200	Enhancers	Brain Germinal Matrix	brain
33	chr18:43991800-43995200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr18:43992200-43994200	Enhancers	Fetal Brain Female	brain
35	chr18:43992600-43994400	Weak transcription	Gastric	stomach
36	chr18:43992600-43994800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr18:43992600-43995400	Enhancers	Psoas Muscle	Psoas
38	chr18:43992600-44001600	Weak transcription	Fetal Thymus	thymus
39	chr18:43992800-43998400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr18:43993000-43994000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr18:43993000-43994200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr18:43993000-43994200	Enhancers	Rectal Smooth Muscle	rectum
43	chr18:43993000-43994400	Enhancers	Colon Smooth Muscle	Colon
44	chr18:43993000-43996400	Weak transcription	Colonic Mucosa	Colon
45	chr18:43993000-43998400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr18:43993200-43998400	Weak transcription	HMEC	breast
47	chr18:43993400-43994400	Weak transcription	Adipose Nuclei	Adipose
48	chr18:43993400-43994400	Weak transcription	Right Atrium	heart
49	chr18:43993400-43995000	Enhancers	Stomach Smooth Muscle	stomach
50	chr18:43993400-43996000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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