Variant report

Variant	rs28708509
Chromosome Location	chr18:43985226-43985227
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs28367364	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28688425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28703931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3911130	0.99[ASN][1000 genomes]
rs4101620	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4286190	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4890325	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61257154	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7243484	0.99[ASN][1000 genomes]
rs73953847	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9946773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9947220	0.99[ASN][1000 genomes]
rs9950147	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9951417	0.99[ASN][1000 genomes]
rs9966539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43973600-43991400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr18:43974200-43990400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr18:43978800-43986200	Weak transcription	Fetal Stomach	stomach
4	chr18:43979800-43986200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr18:43980200-43985400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr18:43981200-43987800	Weak transcription	GM12878-XiMat	blood
7	chr18:43981800-43990200	Weak transcription	Lung	lung
8	chr18:43981800-43991800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr18:43982000-43986600	Weak transcription	Colon Smooth Muscle	Colon
10	chr18:43983000-43989600	Weak transcription	Fetal Lung	lung
11	chr18:43983200-43988200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr18:43983200-43991200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr18:43983400-43985400	Weak transcription	Psoas Muscle	Psoas
14	chr18:43985000-43987800	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr18:43985000-43995200	Enhancers	Fetal Heart	heart
16	chr18:43985200-43985400	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr18:43985200-43985600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr18:43985200-43985600	Enhancers	Placenta	Placenta
19	chr18:43985200-43986800	Enhancers	Esophagus	oesophagus
20	chr18:43985200-43988400	Enhancers	Fetal Muscle Trunk	muscle
21	chr18:43985200-43988600	Enhancers	Right Atrium	heart
22	chr18:43985200-43989800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr18:43985200-43997000	Enhancers	Fetal Muscle Leg	muscle
24	chr18:43985200-43997400	Enhancers	Left Ventricle	heart
25	chr18:43985200-43997800	Enhancers	Right Ventricle	heart
26	chr18:43985200-44000600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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