Variant report

Variant	rs11083223
Chromosome Location	chr18:25232478-25232479
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11873263	0.89[ASN][1000 genomes]
rs11873397	0.90[ASN][1000 genomes]
rs11873957	0.89[ASN][1000 genomes]
rs11876039	0.89[ASN][1000 genomes]
rs12457865	0.90[ASN][1000 genomes]
rs16943951	0.90[ASN][1000 genomes]
rs17665082	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1061993	chr18:25211720-25239455	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1067348	chr18:25213808-25239455	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv833604	chr18:25226727-25417423	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25230000-25232800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr18:25230200-25232600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr18:25230200-25232800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr18:25230200-25233000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr18:25230600-25232600	Enhancers	Fetal Heart	heart
6	chr18:25232200-25236000	Weak transcription	Fetal Lung	lung
7	chr18:25232400-25232800	Active TSS	GM12878-XiMat	blood
8	chr18:25232400-25233000	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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