Variant report

Variant	rs12457865
Chromosome Location	chr18:25252876-25252877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11083223	0.90[ASN][1000 genomes]
rs11873263	0.81[ASN][1000 genomes]
rs11873397	0.82[ASN][1000 genomes]
rs11873957	0.81[ASN][1000 genomes]
rs11876039	0.81[ASN][1000 genomes]
rs12232680	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12604309	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16943909	0.84[EUR][1000 genomes]
rs16943911	0.84[EUR][1000 genomes]
rs16943923	0.84[EUR][1000 genomes]
rs16943951	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17665082	0.84[ASN][1000 genomes]
rs4476253	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4630632	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59338338	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62080946	0.84[EUR][1000 genomes]
rs62100680	0.84[EUR][1000 genomes]
rs948306	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833604	chr18:25226727-25417423	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2763180	chr18:25250167-25257562	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12457865	ANKRD29	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25249600-25255400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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