Variant report

Variant	rs11087414
Chromosome Location	chr20:23111222-23111223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:23092796..23095143-chr20:23110138..23112682,3	K562	blood:
2	chr20:23108883..23111876-chr20:23111933..23114373,2	MCF-7	breast:
3	chr20:23068836..23070645-chr20:23109664..23111369,2	K562	blood:

Variant related genes	Relation type
ENSG00000233746	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11697283	0.96[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs4815176	0.86[CHB][hapmap]
rs55727610	0.89[ASN][1000 genomes]
rs6048561	0.87[CHB][hapmap]
rs6083011	0.96[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs6083014	0.83[CHB][hapmap]
rs6083015	0.83[CHB][hapmap]
rs6083016	0.91[CHB][hapmap];0.87[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6113954	0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs6113957	0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6515302	0.96[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs6515304	0.91[CHB][hapmap];0.87[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs755697	0.86[CHB][hapmap]
rs8122415	0.91[CHB][hapmap]
rs844904	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758516	chr20:23029404-23173240	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23085800-23114600	Enhancers	Placenta	Placenta
2	chr20:23102000-23114000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr20:23104600-23111600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr20:23106000-23112000	Enhancers	Adipose Nuclei	Adipose
5	chr20:23106600-23112600	Weak transcription	Fetal Intestine Large	intestine
6	chr20:23106800-23114400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr20:23106800-23116400	Weak transcription	Esophagus	oesophagus
8	chr20:23107600-23113200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr20:23109000-23120200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr20:23109200-23111400	Enhancers	Lung	lung
11	chr20:23109200-23111800	Enhancers	K562	blood
12	chr20:23109800-23111400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr20:23110000-23112000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr20:23110000-23112800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr20:23110200-23111400	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr20:23110200-23112200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr20:23110200-23112600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr20:23110400-23112400	Weak transcription	HUVEC	blood vessel
19	chr20:23110400-23112800	Weak transcription	Fetal Intestine Small	intestine
20	chr20:23110400-23113400	Weak transcription	Ovary	ovary
21	chr20:23110400-23113600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr20:23110400-23121600	Weak transcription	Primary hematopoietic stem cells	blood
23	chr20:23110600-23113800	Weak transcription	Fetal Heart	heart
24	chr20:23110800-23111600	Enhancers	Fetal Lung	lung
25	chr20:23110800-23112200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr20:23110800-23112600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr20:23111000-23111600	Enhancers	Fetal Stomach	stomach
28	chr20:23111000-23112000	Weak transcription	Right Ventricle	heart
29	chr20:23111000-23112400	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr20:23111000-23112400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr20:23111000-23112400	Weak transcription	Dnd41	blood
32	chr20:23111000-23112600	Weak transcription	Fetal Muscle Leg	muscle
33	chr20:23111000-23112600	Weak transcription	Spleen	Spleen
34	chr20:23111000-23120400	Weak transcription	Pancreas	Pancrea
35	chr20:23111200-23112400	Weak transcription	Right Atrium	heart
36	chr20:23111200-23112800	Weak transcription	Left Ventricle	heart
37	chr20:23111200-23112800	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr20:23111200-23113000	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links