Variant report

Variant	rs6083016
Chromosome Location	chr20:23116016-23116017
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:23115096..23116873-chr20:23336081..23338502,2	K562	blood:
2	chr20:23062655..23064534-chr20:23114013..23116942,2	K562	blood:
3	chr20:23071726..23074715-chr20:23114683..23116931,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SSTR4-12	chr20:23115850-23116277	l_2091_chr20:23108768-23110176_testes

Variant related genes	Relation type
ENSG00000232645	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11087414	0.91[CHB][hapmap];0.87[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11697283	0.82[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs12710326	0.82[ASN][1000 genomes]
rs1884658	0.89[ASN][1000 genomes]
rs4813480	0.89[ASN][1000 genomes]
rs4815176	0.95[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs55727610	0.85[ASN][1000 genomes]
rs6048561	0.95[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs6083011	0.85[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs6083014	0.91[CHB][hapmap];0.87[ASN][1000 genomes]
rs6083015	0.91[CHB][hapmap];0.87[ASN][1000 genomes]
rs6083017	0.80[ASN][1000 genomes]
rs6113954	0.92[CEU][hapmap];0.95[CHB][hapmap];0.80[JPT][hapmap];0.85[ASN][1000 genomes]
rs6113957	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6113960	0.91[ASN][1000 genomes]
rs6515302	0.93[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs6515304	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7269464	0.92[ASN][1000 genomes]
rs755697	0.95[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs8122415	0.81[CEU][hapmap];0.91[CHB][hapmap]
rs844904	0.90[CHB][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758516	chr20:23029404-23173240	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23106800-23116400	Weak transcription	Esophagus	oesophagus
2	chr20:23109000-23120200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr20:23110400-23121600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr20:23111000-23120400	Weak transcription	Pancreas	Pancrea
5	chr20:23112600-23116200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr20:23112600-23120600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr20:23114200-23116400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr20:23114200-23120200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr20:23114200-23121800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr20:23114400-23116800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr20:23114600-23116200	Weak transcription	Adipose Nuclei	Adipose
12	chr20:23114600-23116200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr20:23114600-23116400	Weak transcription	Psoas Muscle	Psoas
14	chr20:23114600-23116400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr20:23114600-23116800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr20:23114600-23116800	Weak transcription	Placenta	Placenta
17	chr20:23114600-23116800	Weak transcription	Lung	lung
18	chr20:23114600-23116800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr20:23114600-23117000	Enhancers	K562	blood
20	chr20:23114600-23117600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr20:23114600-23117600	Weak transcription	Left Ventricle	heart
22	chr20:23114600-23119200	Weak transcription	Spleen	Spleen
23	chr20:23114600-23120400	Weak transcription	Fetal Lung	lung
24	chr20:23114600-23121800	Weak transcription	Right Ventricle	heart
25	chr20:23114600-23122800	Weak transcription	Right Atrium	heart
26	chr20:23114800-23116200	Weak transcription	Dnd41	blood
27	chr20:23114800-23116200	Weak transcription	HUVEC	blood vessel
28	chr20:23114800-23116600	Weak transcription	Fetal Muscle Trunk	muscle
29	chr20:23114800-23116600	Weak transcription	Fetal Muscle Leg	muscle
30	chr20:23115400-23117200	Weak transcription	A549	lung
31	chr20:23115800-23122600	Enhancers	Primary neutrophils fromperipheralblood	blood

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