Variant report

Variant	rs11087491
Chromosome Location	chr20:24959382-24959383
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24959038..24961782-chr20:24965978..24967936,3	MCF-7	breast:
2	chr20:24959138..24961345-chr20:25043562..25046337,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12625319	0.81[AFR][1000 genomes]
rs13041643	0.81[AFR][1000 genomes]
rs2387572	0.81[AFR][1000 genomes]
rs4815351	0.81[AFR][1000 genomes]
rs6138437	0.81[AFR][1000 genomes]
rs8183891	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062140	chr20:24807962-25304054	Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv544219	chr20:24807962-25304054	Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv1056345	chr20:24819570-25168159	Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv1055341	chr20:24848416-25302271	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	esv2762068	chr20:24908860-24974986	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv585745	chr20:24932028-25007089	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24935200-24971800	Weak transcription	K562	blood
2	chr20:24942000-24972400	Weak transcription	Fetal Heart	heart
3	chr20:24942800-24961600	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr20:24943200-24965000	Strong transcription	Primary T helper cells PMA-I stimulated	--
5	chr20:24944800-24960600	Weak transcription	Stomach Mucosa	stomach
6	chr20:24950000-24966400	Weak transcription	Small Intestine	intestine
7	chr20:24950800-24961000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr20:24951600-24960400	Genic enhancers	Primary neutrophils fromperipheralblood	blood
9	chr20:24952800-24961000	Weak transcription	NHDF-Ad	bronchial
10	chr20:24953200-24962200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr20:24953600-24960400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr20:24953600-24960800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr20:24953600-24972000	Weak transcription	NH-A	brain
14	chr20:24954000-24960600	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr20:24954000-24961000	Weak transcription	Colon Smooth Muscle	Colon
16	chr20:24954200-24959800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr20:24954200-24959800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr20:24954200-24960000	Weak transcription	Gastric	stomach
19	chr20:24954200-24960800	Weak transcription	HMEC	breast
20	chr20:24954200-24960800	Weak transcription	NHEK	skin
21	chr20:24954200-24961000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr20:24954200-24961000	Weak transcription	HSMMtube	muscle
23	chr20:24954200-24961800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr20:24954200-24965800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr20:24954400-24960000	Weak transcription	Pancreas	Pancrea
26	chr20:24954400-24961000	Weak transcription	NHLF	lung
27	chr20:24954800-24960000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr20:24954800-24961200	Weak transcription	Right Ventricle	heart
29	chr20:24954800-24965800	Weak transcription	Psoas Muscle	Psoas
30	chr20:24955400-24961200	Weak transcription	Hela-S3	cervix
31	chr20:24956400-24960600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr20:24956800-24962000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr20:24957000-24960200	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr20:24957000-24960200	Strong transcription	Fetal Intestine Large	intestine
35	chr20:24957000-24960400	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr20:24957000-24961200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr20:24957000-24962800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr20:24957000-24963200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr20:24957000-24963600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr20:24957000-24964200	Strong transcription	Stomach Smooth Muscle	stomach
41	chr20:24957200-24960400	Strong transcription	Placenta	Placenta
42	chr20:24957200-24961000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr20:24957200-24961600	Strong transcription	Aorta	Aorta
44	chr20:24957200-24962000	Genic enhancers	Brain Hippocampus Middle	brain
45	chr20:24957200-24963800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr20:24957200-24964600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr20:24957400-24959400	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr20:24957400-24959600	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr20:24957400-24959800	Strong transcription	Thymus	Thymus
50	chr20:24957400-24961200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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