Variant report

Variant	rs11088355
Chromosome Location	chr21:37897932-37897933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11702057	0.95[EUR][1000 genomes]
rs12626551	0.94[EUR][1000 genomes]
rs17814164	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2835381	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2835385	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2835386	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2835387	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7279600	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7283212	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs743426	0.87[EUR][1000 genomes]
rs8127992	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8134973	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9981423	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834090	chr21:37812545-38009542	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1064290	chr21:37878964-37983133	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37894800-37898800	Weak transcription	Right Atrium	heart
2	chr21:37895800-37902600	Weak transcription	GM12878-XiMat	blood
3	chr21:37897000-37911600	Weak transcription	Pancreas	Pancrea
4	chr21:37897600-37902200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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