Variant report

Variant	rs11702057
Chromosome Location	chr21:37909704-37909705
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10854378	0.80[ASN][1000 genomes]
rs11088355	0.95[EUR][1000 genomes]
rs12626551	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17814164	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2835381	0.84[EUR][1000 genomes]
rs2835385	0.86[EUR][1000 genomes]
rs2835386	0.87[EUR][1000 genomes]
rs2835387	0.87[EUR][1000 genomes]
rs7276044	0.80[ASN][1000 genomes]
rs7279600	0.86[EUR][1000 genomes]
rs7283212	0.86[EUR][1000 genomes]
rs743426	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8127992	0.86[EUR][1000 genomes]
rs8134973	0.86[EUR][1000 genomes]
rs9977315	0.83[ASN][1000 genomes]
rs9981423	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9981948	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834090	chr21:37812545-38009542	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1064290	chr21:37878964-37983133	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37897000-37911600	Weak transcription	Pancreas	Pancrea
2	chr21:37908000-37911800	Weak transcription	Gastric	stomach
3	chr21:37908400-37911600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr21:37908400-37911800	Weak transcription	Fetal Kidney	kidney
5	chr21:37908800-37910400	Enhancers	GM12878-XiMat	blood
6	chr21:37908800-37911000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr21:37909400-37914400	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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