Variant report

Variant	rs1108956
Chromosome Location	chr13:51822566-51822567
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51820571..51823207-chr13:51824938..51826606,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs15652	1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7337236	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9316532	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9535626	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs9568561	1.00[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs9596484	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51805200-51825600	Weak transcription	Aorta	Aorta
2	chr13:51813200-51822600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:51816200-51836600	Weak transcription	Adipose Nuclei	Adipose
4	chr13:51816800-51836000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr13:51817400-51827200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr13:51817600-51827200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr13:51817800-51827600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr13:51818800-51832800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr13:51820200-51823800	Genic enhancers	H1 Cell Line	embryonic stem cell
10	chr13:51820200-51825000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr13:51820600-51823000	Genic enhancers	H9 Cell Line	embryonic stem cell
12	chr13:51820800-51833000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr13:51821000-51824200	Genic enhancers	HUES6 Cell Line	embryonic stem cell
14	chr13:51821200-51823000	Enhancers	Colon Smooth Muscle	Colon
15	chr13:51821200-51824600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr13:51821200-51829600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr13:51821400-51823800	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr13:51821400-51824800	Weak transcription	Lung	lung
19	chr13:51821400-51824800	Weak transcription	Right Ventricle	heart
20	chr13:51821400-51825600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr13:51821400-51825800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr13:51821400-51825800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr13:51821400-51825800	Weak transcription	Left Ventricle	heart
24	chr13:51821400-51827200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr13:51821400-51829600	Weak transcription	Right Atrium	heart
26	chr13:51821400-51833200	Weak transcription	Fetal Muscle Trunk	muscle
27	chr13:51821400-51833800	Weak transcription	Gastric	stomach
28	chr13:51821600-51823000	Enhancers	Brain Angular Gyrus	brain
29	chr13:51821600-51825400	Enhancers	Brain Cingulate Gyrus	brain
30	chr13:51821600-51836200	Weak transcription	Fetal Muscle Leg	muscle
31	chr13:51821600-51839000	Weak transcription	Esophagus	oesophagus
32	chr13:51821600-51845000	Weak transcription	Fetal Brain Male	brain
33	chr13:51821800-51822600	Weak transcription	Pancreas	Pancrea
34	chr13:51821800-51822800	Enhancers	Stomach Smooth Muscle	stomach
35	chr13:51821800-51825000	Weak transcription	Fetal Stomach	stomach
36	chr13:51821800-51825200	Enhancers	Brain Anterior Caudate	brain
37	chr13:51821800-51825400	Enhancers	Brain Substantia Nigra	brain
38	chr13:51821800-51825600	Weak transcription	Spleen	Spleen
39	chr13:51821800-51825800	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr13:51821800-51831400	Weak transcription	Fetal Lung	lung
41	chr13:51822000-51822800	Genic enhancers	HUES64 Cell Line	embryonic stem cell
42	chr13:51822000-51823400	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr13:51822000-51824400	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr13:51822200-51823000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr13:51822200-51823400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr13:51822200-51823600	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr13:51822200-51823800	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr13:51822200-51824400	Genic enhancers	HUES48 Cell Line	embryonic stem cell
49	chr13:51822200-51824600	Weak transcription	Rectal Smooth Muscle	rectum
50	chr13:51822200-51833200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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