Variant report

Variant	rs7337236
Chromosome Location	chr13:51820344-51820345
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1108956	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs15652	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4942983	0.84[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9316532	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9535626	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs9568561	1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs9596484	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7337236	RNASEH2B	cis	cerebellum	SCAN
rs7337236	FAM124A	cis	cerebellum	SCAN

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51805200-51825600	Weak transcription	Aorta	Aorta
2	chr13:51808000-51821200	Enhancers	Brain Substantia Nigra	brain
3	chr13:51808400-51821400	Enhancers	Fetal Heart	heart
4	chr13:51812600-51820600	Weak transcription	Right Ventricle	heart
5	chr13:51812600-51821000	Weak transcription	Spleen	Spleen
6	chr13:51813200-51822600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr13:51813600-51821200	Enhancers	Brain Cingulate Gyrus	brain
8	chr13:51814000-51820600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr13:51815000-51821400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr13:51815600-51821000	Weak transcription	Right Atrium	heart
11	chr13:51816200-51820600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr13:51816200-51836600	Weak transcription	Adipose Nuclei	Adipose
13	chr13:51816800-51836000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr13:51817000-51821000	Enhancers	Brain Angular Gyrus	brain
15	chr13:51817400-51821200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr13:51817400-51827200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr13:51817600-51827200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr13:51817800-51827600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr13:51818000-51821200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr13:51818400-51820600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr13:51818800-51820600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr13:51818800-51820600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr13:51818800-51832800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr13:51819000-51820600	Enhancers	H9 Cell Line	embryonic stem cell
25	chr13:51819000-51820600	Weak transcription	Left Ventricle	heart
26	chr13:51819000-51821000	Enhancers	Brain Hippocampus Middle	brain
27	chr13:51819200-51820400	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr13:51819200-51820600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr13:51819200-51821000	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr13:51819200-51821200	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr13:51819200-51821400	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr13:51819400-51820600	Enhancers	Colon Smooth Muscle	Colon
33	chr13:51819400-51821000	Genic enhancers	HUES48 Cell Line	embryonic stem cell
34	chr13:51820000-51820400	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr13:51820000-51821000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr13:51820000-51821600	Enhancers	Fetal Brain Female	brain
37	chr13:51820000-51822200	Enhancers	Fetal Kidney	kidney
38	chr13:51820200-51820400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr13:51820200-51820400	Flanking Active TSS	Brain Anterior Caudate	brain
40	chr13:51820200-51820400	Enhancers	Stomach Smooth Muscle	stomach
41	chr13:51820200-51820600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr13:51820200-51820600	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr13:51820200-51820600	Weak transcription	Fetal Brain Male	brain
44	chr13:51820200-51821000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr13:51820200-51821200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr13:51820200-51821200	Flanking Active TSS	Brain Germinal Matrix	brain
47	chr13:51820200-51821200	Enhancers	Fetal Thymus	thymus
48	chr13:51820200-51821400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr13:51820200-51821800	Enhancers	Fetal Lung	lung
50	chr13:51820200-51822200	Enhancers	Rectal Smooth Muscle	rectum

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