Variant report

Variant	rs11089564
Chromosome Location	chr22:32820366-32820367
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:32819717..32822540-chr22:32869209..32872621,3	K562	blood:
2	chr22:32813930..32815721-chr22:32818437..32821408,3	K562	blood:
3	22:32228866-32235273..22:32819468-32826336	GM12878	blood:
4	22:32264718-32278135..22:32819468-32826336	GM12878	blood:
5	chr22:32818703..32822540-chr22:32869209..32873188,4	K562	blood:
6	22:32292186-32294405..22:32819468-32826336	GM12878	blood:

Variant related genes	Relation type
ENSG00000100150	Chromatin interaction
ENSG00000252909	Chromatin interaction
ENSG00000100225	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11635	0.82[ASN][1000 genomes]
rs11912349	0.92[ASN][1000 genomes]
rs12628702	0.90[ASN][1000 genomes]
rs1543320	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.92[YRI][hapmap]
rs16990428	0.95[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs16990430	0.95[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs2014356	1.00[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs2072815	0.82[CHB][hapmap]
rs2072816	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs2076041	0.81[ASN][1000 genomes]
rs2076045	0.95[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs2076048	0.83[CHB][hapmap]
rs2076049	0.83[CHB][hapmap]
rs2281034	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs2281035	0.86[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs2294311	0.80[ASN][1000 genomes]
rs2294313	0.91[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs2294314	0.80[ASN][1000 genomes]
rs2413113	0.82[CHB][hapmap]
rs4140572	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs5749416	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs5749427	0.82[ASN][1000 genomes]
rs5749428	0.86[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs5749429	0.86[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs5749432	0.83[CHB][hapmap]
rs5749433	0.90[ASN][1000 genomes]
rs5749436	1.00[CHB][hapmap];0.92[CHD][hapmap]
rs5754065	0.86[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs5754080	1.00[CEU][hapmap];0.95[JPT][hapmap];0.95[MKK][hapmap]
rs59895149	0.82[ASN][1000 genomes]
rs5998471	0.82[CHB][hapmap]
rs5998475	0.86[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs713790	0.86[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs737779	0.82[CHB][hapmap]
rs742096	0.86[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459874	chr22:32574274-32866934	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv588895	chr22:32574274-32866934	Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
3	nsv1064737	chr22:32603912-32829725	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv1055701	chr22:32806595-32845403	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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