Variant report

Variant	rs5749436
Chromosome Location	chr22:32823156-32823157
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	22:32228866-32235273..22:32819468-32826336	GM12878	blood:
2	22:32264718-32278135..22:32819468-32826336	GM12878	blood:
3	22:32292186-32294405..22:32819468-32826336	GM12878	blood:

Variant related genes	Relation type
ENSG00000100150	Chromatin interaction
ENSG00000252909	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11089564	1.00[CHB][hapmap];0.92[CHD][hapmap]
rs11089565	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11913815	0.82[TSI][hapmap]
rs12160986	0.81[JPT][hapmap]
rs12163081	0.91[ASN][1000 genomes]
rs1543320	0.95[CHB][hapmap];0.93[CHD][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs16987625	0.81[JPT][hapmap]
rs16990262	0.80[JPT][hapmap]
rs16990428	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs16990430	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2014356	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2072815	0.82[CHB][hapmap]
rs2072816	0.95[JPT][hapmap]
rs2076045	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2076048	0.83[CHB][hapmap]
rs2076049	0.83[CHB][hapmap]
rs2281034	0.82[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap]
rs2281035	0.86[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap]
rs2294313	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2413113	0.82[CHB][hapmap]
rs2899185	0.81[JPT][hapmap]
rs4140572	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs5749413	0.81[JPT][hapmap]
rs5749414	0.90[JPT][hapmap]
rs5749416	0.82[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap]
rs5749428	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs5749429	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs5749432	0.83[CHB][hapmap]
rs5749435	0.99[ASN][1000 genomes]
rs5749437	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5754008	0.81[JPT][hapmap]
rs5754009	0.81[JPT][hapmap]
rs5754010	0.81[JPT][hapmap]
rs5754018	0.81[JPT][hapmap]
rs5754029	0.80[JPT][hapmap]
rs5754035	0.81[JPT][hapmap]
rs5754039	0.81[JPT][hapmap]
rs5754042	0.81[JPT][hapmap]
rs5754045	0.80[JPT][hapmap]
rs5754050	0.84[JPT][hapmap]
rs5754065	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs5754080	0.83[ASN][1000 genomes]
rs5998457	0.81[JPT][hapmap]
rs5998459	0.81[JPT][hapmap]
rs5998471	0.82[CHB][hapmap]
rs5998475	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs713790	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs7285033	0.83[ASN][1000 genomes]
rs737779	0.82[CHB][hapmap]
rs742096	0.86[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459874	chr22:32574274-32866934	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv588895	chr22:32574274-32866934	Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
3	nsv1064737	chr22:32603912-32829725	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv1055701	chr22:32806595-32845403	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32822400-32823600	Enhancers	Liver	Liver

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