Variant report

Variant	rs11089591
Chromosome Location	chr22:33110783-33110784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10854627	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10854628	0.84[ASN][1000 genomes]
rs12484015	0.85[ASN][1000 genomes]
rs12484429	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13054529	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13058500	1.00[ASN][1000 genomes]
rs1475978	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1475979	0.91[ASN][1000 genomes]
rs16991028	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16991084	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2899193	0.87[ASN][1000 genomes]
rs3827339	0.87[ASN][1000 genomes]
rs4821089	0.90[ASN][1000 genomes]
rs5754227	0.89[ASN][1000 genomes]
rs725337	0.88[ASN][1000 genomes]
rs725338	0.84[ASN][1000 genomes]
rs7286819	1.00[ASN][1000 genomes]
rs7289865	0.81[ASN][1000 genomes]
rs7291198	0.86[ASN][1000 genomes]
rs7291871	0.86[ASN][1000 genomes]
rs731933	0.99[ASN][1000 genomes]
rs743741	1.00[ASN][1000 genomes]
rs743742	0.87[ASN][1000 genomes]
rs743744	0.99[ASN][1000 genomes]
rs743745	0.87[ASN][1000 genomes]
rs9619301	0.86[ASN][1000 genomes]
rs997120	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064719	chr22:33028891-33159636	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33103000-33113600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr22:33104400-33117000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr22:33105200-33110800	Weak transcription	HSMMtube	muscle
4	chr22:33105200-33113400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr22:33105200-33113800	Weak transcription	NH-A	brain
6	chr22:33107800-33111200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr22:33108000-33111400	Enhancers	Osteobl	bone
8	chr22:33108200-33112400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr22:33108800-33113200	Weak transcription	Left Ventricle	heart
10	chr22:33108800-33113200	Weak transcription	Lung	lung
11	chr22:33108800-33113200	Weak transcription	NHLF	lung
12	chr22:33108800-33113600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr22:33109000-33113400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr22:33109000-33113800	Weak transcription	Spleen	Spleen
15	chr22:33109200-33113400	Weak transcription	Adipose Nuclei	Adipose
16	chr22:33109200-33115600	Weak transcription	Thymus	Thymus
17	chr22:33109400-33111000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr22:33109400-33113400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr22:33109400-33113800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr22:33109400-33115800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr22:33109800-33111400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr22:33110000-33111000	Enhancers	Fetal Lung	lung
23	chr22:33110200-33112000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr22:33110400-33110800	Weak transcription	Fetal Muscle Leg	muscle
25	chr22:33110400-33111200	Weak transcription	Fetal Stomach	stomach
26	chr22:33110400-33111400	Enhancers	Fetal Heart	heart
27	chr22:33110400-33113200	Weak transcription	Right Atrium	heart
28	chr22:33110400-33113400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr22:33110400-33113600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr22:33110400-33116800	Weak transcription	NHDF-Ad	bronchial
31	chr22:33110600-33111400	Weak transcription	Placenta	Placenta
32	chr22:33110600-33113200	Weak transcription	Right Ventricle	heart

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