Variant report

Variant	rs10854628
Chromosome Location	chr22:33104515-33104516
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10854627	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11089591	0.84[ASN][1000 genomes]
rs11913403	0.87[ASN][1000 genomes]
rs13054529	0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13058500	0.87[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs1475978	0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs1475979	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs16991028	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs16991084	0.87[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs2899193	0.96[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3827339	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4821089	0.83[CHB][hapmap]
rs5754222	0.87[CHB][hapmap];0.87[ASN][1000 genomes]
rs5754226	0.85[CHB][hapmap];0.86[ASN][1000 genomes]
rs5754227	0.87[CHB][hapmap]
rs7286819	0.90[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs7291090	0.91[CHB][hapmap];0.88[ASN][1000 genomes]
rs7291198	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7291871	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs731933	0.87[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs743741	0.87[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs743742	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs743744	0.84[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs743745	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs8136470	0.89[CHB][hapmap];0.80[ASN][1000 genomes]
rs9619301	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs997120	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064719	chr22:33028891-33159636	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33103000-33113600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr22:33103400-33106200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr22:33103600-33104600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr22:33103600-33105400	Enhancers	Fetal Stomach	stomach
5	chr22:33103600-33105600	Enhancers	HMEC	breast
6	chr22:33103600-33106000	Enhancers	NHDF-Ad	bronchial
7	chr22:33103600-33106000	Enhancers	Osteobl	bone
8	chr22:33103800-33105000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr22:33103800-33105400	Enhancers	HSMM	muscle
10	chr22:33103800-33105600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr22:33103800-33105600	Enhancers	Adipose Nuclei	Adipose
12	chr22:33104000-33104600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr22:33104000-33105200	Enhancers	Fetal Lung	lung
14	chr22:33104000-33105200	Enhancers	Fetal Muscle Trunk	muscle
15	chr22:33104000-33106400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr22:33104200-33105200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr22:33104200-33105200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr22:33104200-33105200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr22:33104200-33105400	Enhancers	Fetal Muscle Leg	muscle
20	chr22:33104200-33107200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr22:33104400-33105200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr22:33104400-33105400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr22:33104400-33105800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr22:33104400-33117000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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