Variant report

Variant	rs5754226
Chromosome Location	chr22:33104348-33104349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10854627	0.85[CHB][hapmap];0.84[ASN][1000 genomes]
rs10854628	0.85[CHB][hapmap];0.86[ASN][1000 genomes]
rs11089590	0.90[ASN][1000 genomes]
rs11913403	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12484429	0.80[CHB][hapmap]
rs2899193	0.81[CHB][hapmap];0.85[ASN][1000 genomes]
rs3827339	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs5754222	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5754227	0.81[CHB][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7289865	0.87[AMR][1000 genomes]
rs7291090	0.95[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7291198	0.85[CHB][hapmap];0.86[ASN][1000 genomes]
rs7291871	0.86[ASN][1000 genomes]
rs743742	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs743745	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs8136470	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs9619301	0.85[CHB][hapmap];0.86[ASN][1000 genomes]
rs9621545	0.82[JPT][hapmap]
rs997120	0.85[CHB][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064719	chr22:33028891-33159636	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33103000-33113600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr22:33103400-33104400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr22:33103400-33106200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr22:33103600-33104600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr22:33103600-33105400	Enhancers	Fetal Stomach	stomach
6	chr22:33103600-33105600	Enhancers	HMEC	breast
7	chr22:33103600-33106000	Enhancers	NHDF-Ad	bronchial
8	chr22:33103600-33106000	Enhancers	Osteobl	bone
9	chr22:33103800-33105000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr22:33103800-33105400	Enhancers	HSMM	muscle
11	chr22:33103800-33105600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr22:33103800-33105600	Enhancers	Adipose Nuclei	Adipose
13	chr22:33104000-33104600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr22:33104000-33105200	Enhancers	Fetal Lung	lung
15	chr22:33104000-33105200	Enhancers	Fetal Muscle Trunk	muscle
16	chr22:33104000-33106400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr22:33104200-33105200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr22:33104200-33105200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr22:33104200-33105200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr22:33104200-33105400	Enhancers	Fetal Muscle Leg	muscle
21	chr22:33104200-33107200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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