Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1012366	0.81[TSI][hapmap]
rs10854627	0.91[CHB][hapmap];0.87[CHD][hapmap];0.83[LWK][hapmap];0.88[MKK][hapmap];0.88[ASN][1000 genomes]
rs10854628	0.87[CHB][hapmap];0.87[ASN][1000 genomes]
rs11089590	0.86[ASN][1000 genomes]
rs11913403	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12484429	0.80[CHD][hapmap];1.00[MEX][hapmap];0.81[ASN][1000 genomes]
rs2899193	0.83[CHB][hapmap];0.86[ASN][1000 genomes]
rs3827339	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs5754189	0.81[TSI][hapmap]
rs5754226	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5754227	0.83[CHB][hapmap];0.84[JPT][hapmap];0.93[YRI][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs717168	0.81[TSI][hapmap]
rs7286819	0.80[CHB][hapmap]
rs7289865	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7291090	0.86[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7291198	0.87[CHB][hapmap];0.84[CHD][hapmap];0.86[ASN][1000 genomes]
rs7291871	0.86[ASN][1000 genomes]
rs743742	0.87[CHB][hapmap];0.83[CHD][hapmap];0.86[ASN][1000 genomes]
rs743745	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs8136470	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs9619301	0.86[CHB][hapmap];0.86[ASN][1000 genomes]
rs9621545	0.82[JPT][hapmap]
rs997120	0.87[CHB][hapmap];0.83[CHD][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064719	chr22:33028891-33159636	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs5754222	XBP1	cis	cerebellum	SCAN
rs5754222	FBXO7	cis	parietal	SCAN
rs5754222	EIF4ENIF1	cis	cerebellum	SCAN
rs5754222	SLC35E4	cis	parietal	SCAN
rs5754222	HSCB	cis	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33101600-33104000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr22:33103000-33113600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr22:33103200-33104000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
4	chr22:33103400-33104400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr22:33103400-33106200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr22:33103600-33104200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr22:33103600-33104600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr22:33103600-33105400	Enhancers	Fetal Stomach	stomach
9	chr22:33103600-33105600	Enhancers	HMEC	breast
10	chr22:33103600-33106000	Enhancers	NHDF-Ad	bronchial
11	chr22:33103600-33106000	Enhancers	Osteobl	bone
12	chr22:33103800-33104200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr22:33103800-33105000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr22:33103800-33105400	Enhancers	HSMM	muscle
15	chr22:33103800-33105600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr22:33103800-33105600	Enhancers	Adipose Nuclei	Adipose

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