Variant report

Variant	rs1109332
Chromosome Location	chr6:24262457-24262458
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24255591..24257223-chr6:24261586..24264170,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1091045	0.90[ASN][1000 genomes]
rs1091046	0.92[ASN][1000 genomes]
rs1091047	0.91[ASN][1000 genomes]
rs11754080	0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11754278	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11757997	0.92[ASN][1000 genomes]
rs11757999	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17302512	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17302582	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17302729	0.92[ASN][1000 genomes]
rs2262443	0.91[ASN][1000 genomes]
rs2296537	0.92[ASN][1000 genomes]
rs2296538	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2328208	0.89[ASN][1000 genomes]
rs28921369	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28924368	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3789224	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3789225	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3789227	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3804327	0.91[ASN][1000 genomes]
rs58592947	0.93[ASN][1000 genomes]
rs59975176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60387283	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60537291	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62400411	0.90[ASN][1000 genomes]
rs62400414	0.90[ASN][1000 genomes]
rs62400417	0.91[ASN][1000 genomes]
rs62403468	0.84[ASN][1000 genomes]
rs66492054	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66735044	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67482549	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67939976	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs68182041	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72828983	0.92[EUR][1000 genomes]
rs72828999	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72830803	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72830805	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72830807	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72830822	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72830828	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72830832	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72830841	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72830842	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72830843	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72830851	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72830854	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72830855	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72830859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72830865	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72830874	0.93[ASN][1000 genomes]
rs73394078	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73394097	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs807712	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24232000-24263000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24243800-24270000	Weak transcription	Fetal Kidney	kidney
3	chr6:24259800-24263000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:24261600-24263200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:24261600-24265200	Strong transcription	HepG2	liver
6	chr6:24261800-24262800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:24261800-24262800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:24261800-24262800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:24262000-24262800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr6:24262000-24262800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:24262200-24262600	Enhancers	H9 Cell Line	embryonic stem cell
12	chr6:24262200-24262800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr6:24262200-24263000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr6:24262200-24263200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:24262200-24263200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:24262200-24263400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr6:24262400-24262600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:24262400-24262800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:24262400-24263200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:24262400-24263400	Enhancers	Pancreas	Pancrea

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