Variant report

Variant	rs72830828
Chromosome Location	chr6:24243219-24243220
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1091046	0.82[ASN][1000 genomes]
rs1091047	0.81[ASN][1000 genomes]
rs1109332	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11754080	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11754278	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11757997	0.97[ASN][1000 genomes]
rs11757999	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17302512	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17302582	0.82[ASN][1000 genomes]
rs17302729	0.82[ASN][1000 genomes]
rs2262443	0.81[ASN][1000 genomes]
rs2296537	0.82[ASN][1000 genomes]
rs2296538	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28921369	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28924368	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3789224	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3789225	0.82[ASN][1000 genomes]
rs3789227	0.82[ASN][1000 genomes]
rs3804327	0.81[ASN][1000 genomes]
rs4052671	0.81[ASN][1000 genomes]
rs58592947	0.83[ASN][1000 genomes]
rs59975176	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60387283	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60537291	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62400417	0.81[ASN][1000 genomes]
rs62403464	0.80[ASN][1000 genomes]
rs62403468	0.95[ASN][1000 genomes]
rs66492054	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66735044	0.82[ASN][1000 genomes]
rs67482549	0.82[ASN][1000 genomes]
rs67939976	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs68182041	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72828983	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72828999	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72830803	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72830805	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72830807	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72830822	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72830832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72830841	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72830842	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72830843	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72830851	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72830854	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72830855	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72830859	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72830874	0.83[ASN][1000 genomes]
rs73394078	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73394097	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs807712	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24228800-24245600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:24229400-24243400	Weak transcription	Fetal Kidney	kidney
3	chr6:24232000-24263000	Weak transcription	Fetal Intestine Small	intestine
4	chr6:24241200-24250200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:24241600-24245000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:24242600-24245000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:24242600-24245600	Enhancers	Rectal Smooth Muscle	rectum
8	chr6:24242800-24244600	Strong transcription	HepG2	liver
9	chr6:24242800-24245400	Enhancers	Pancreas	Pancrea
10	chr6:24243200-24243600	Flanking Active TSS	Colon Smooth Muscle	Colon

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