Variant report

Variant	rs11096661
Chromosome Location	chr2:20588736-20588737
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:20587063..20590081-chr2:20645437..20648292,3	MCF-7	breast:
2	chr2:20587207..20591991-chr2:20644052..20649862,9	MCF-7	breast:
3	chr2:20549816..20551964-chr2:20588277..20590176,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143878	Chromatin interaction
ENSG00000055917	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10856798	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11096662	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11675693	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11678068	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11683057	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11692468	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11692578	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11887662	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11896241	0.82[CEU][hapmap]
rs12472111	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12472980	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12475795	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17653822	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17670898	0.90[CEU][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2098293	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2110410	0.82[CEU][hapmap]
rs35133647	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58495411	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62124611	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62124613	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62124635	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72788926	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72788927	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs741188	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873716	chr2:20572094-20621404	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv581165	chr2:20581058-20616990	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20581600-20601000	Weak transcription	Right Atrium	heart
2	chr2:20585800-20593800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr2:20586600-20589800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:20586600-20592000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr2:20587200-20591400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:20587800-20591600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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