Variant report

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:20592640..20602218-chr2:20644635..20652468,15	MCF-7	breast:
2	chr2:20593621..20596225-chr2:20647006..20648525,2	K562	blood:
3	chr2:20550164..20552284-chr2:20593869..20596397,2	MCF-7	breast:
4	chr2:20592207..20594364-chr2:20849434..20851619,2	MCF-7	breast:
5	chr2:20584530..20587951-chr2:20592064..20594504,3	MCF-7	breast:
6	chr2:20579020..20581458-chr2:20591808..20594214,2	MCF-7	breast:
7	chr2:20593175..20595883-chr2:20842379..20844457,2	MCF-7	breast:
8	chr2:20592950..20595053-chr2:20848128..20849910,2	K562	blood:
9	chr2:20593415..20596009-chr2:20611195..20613787,2	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10856798	0.85[AMR][1000 genomes]
rs11096661	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11675693	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11678068	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11683057	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11692468	0.91[ASN][1000 genomes]
rs11692578	0.91[ASN][1000 genomes]
rs11887662	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12472111	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12472980	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12475795	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17653822	0.91[ASN][1000 genomes]
rs17670898	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2098293	0.91[ASN][1000 genomes]
rs35133647	0.85[AMR][1000 genomes]
rs62124611	0.85[AMR][1000 genomes]
rs62124613	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62124635	0.91[ASN][1000 genomes]
rs72788926	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72788927	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873716	chr2:20572094-20621404	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv581165	chr2:20581058-20616990	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20581600-20601000	Weak transcription	Right Atrium	heart
2	chr2:20590800-20595600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr2:20592600-20596000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:20592600-20600200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:20593600-20594600	Enhancers	Fetal Brain Male	brain
6	chr2:20593800-20595800	Enhancers	Duodenum Mucosa	Duodenum
7	chr2:20594000-20595000	Enhancers	Fetal Intestine Small	intestine
8	chr2:20594000-20595400	Enhancers	Fetal Intestine Large	intestine
9	chr2:20594000-20596400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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