Variant report
Variant | rs11097030 |
---|---|
Chromosome Location | chr4:85970461-85970462 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10856852 | 0.90[ASN][1000 genomes] |
rs11732309 | 0.93[ASN][1000 genomes] |
rs11732347 | 0.94[ASN][1000 genomes] |
rs12498787 | 0.94[ASN][1000 genomes] |
rs12640378 | 0.94[ASN][1000 genomes] |
rs12640811 | 0.88[ASN][1000 genomes] |
rs13124246 | 0.86[ASN][1000 genomes] |
rs13148035 | 0.82[ASN][1000 genomes] |
rs28754901 | 0.90[ASN][1000 genomes] |
rs34239067 | 0.92[ASN][1000 genomes] |
rs34314581 | 0.89[ASN][1000 genomes] |
rs4287999 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4470615 | 0.98[ASN][1000 genomes] |
rs4533765 | 0.90[ASN][1000 genomes] |
rs4626191 | 0.94[ASN][1000 genomes] |
rs4634212 | 0.98[ASN][1000 genomes] |
rs56194765 | 0.93[ASN][1000 genomes] |
rs6531782 | 0.93[ASN][1000 genomes] |
rs7663580 | 0.93[ASN][1000 genomes] |
rs7675324 | 0.91[ASN][1000 genomes] |
rs9790649 | 0.97[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv1829655 | chr4:85577491-86292692 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
2 | nsv519588 | chr4:85762385-86591202 | Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
3 | esv3367963 | chr4:85911017-86246036 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:85966200-85971600 | Weak transcription | HepG2 | liver |