Variant report

Variant	rs4287999
Chromosome Location	chr4:85974024-85974025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10856852	0.94[ASW][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs11097030	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11732309	0.94[ASN][1000 genomes]
rs11732347	0.95[ASN][1000 genomes]
rs12498787	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12640378	0.95[ASN][1000 genomes]
rs12640811	0.89[ASN][1000 genomes]
rs13124246	0.87[ASN][1000 genomes]
rs13148035	0.83[ASN][1000 genomes]
rs1508670	0.84[JPT][hapmap]
rs17009341	0.88[GIH][hapmap];0.95[JPT][hapmap]
rs2046404	0.95[JPT][hapmap]
rs28754901	0.91[ASN][1000 genomes]
rs34239067	0.93[ASN][1000 genomes]
rs34314581	0.90[ASN][1000 genomes]
rs4383611	0.83[CHD][hapmap];0.90[JPT][hapmap]
rs4470615	0.99[ASN][1000 genomes]
rs4533765	0.88[ASW][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs4590017	0.83[CHD][hapmap];0.90[JPT][hapmap]
rs4626191	0.95[ASN][1000 genomes]
rs4634212	0.99[ASN][1000 genomes]
rs56194765	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6531777	0.88[GIH][hapmap];0.95[JPT][hapmap]
rs6531782	0.88[ASW][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6531783	0.83[CHD][hapmap];0.90[JPT][hapmap]
rs7654035	0.95[JPT][hapmap]
rs7661609	0.88[GIH][hapmap];0.95[JPT][hapmap]
rs7663580	0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];0.92[YRI][hapmap];0.94[ASN][1000 genomes]
rs7675324	0.92[ASN][1000 genomes]
rs7692223	0.90[JPT][hapmap]
rs7694949	0.86[GIH][hapmap];0.95[JPT][hapmap]
rs7699226	0.88[GIH][hapmap];0.95[JPT][hapmap]
rs9790649	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv3367963	chr4:85911017-86246036	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4287999	NCRNA00247	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85973800-85974200	Weak transcription	HepG2	liver

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