Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10034094	0.88[ASN][1000 genomes]
rs11947357	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12152604	0.89[ASN][1000 genomes]
rs12152609	0.89[ASN][1000 genomes]
rs1397377	0.89[ASN][1000 genomes]
rs1397378	0.89[ASN][1000 genomes]
rs1473012	0.89[ASN][1000 genomes]
rs1473013	0.89[ASN][1000 genomes]
rs1473014	0.89[ASN][1000 genomes]
rs1473015	0.89[ASN][1000 genomes]
rs1510583	0.85[ASN][1000 genomes]
rs1606017	0.86[ASN][1000 genomes]
rs17011103	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs180778	0.97[ASN][1000 genomes]
rs2601832	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2601833	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28770594	0.89[ASN][1000 genomes]
rs28814882	0.84[ASN][1000 genomes]
rs345326	0.94[ASN][1000 genomes]
rs345327	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs345335	0.97[ASN][1000 genomes]
rs345339	0.97[ASN][1000 genomes]
rs345348	0.86[ASN][1000 genomes]
rs345353	0.83[ASN][1000 genomes]
rs345361	0.96[ASN][1000 genomes]
rs4420970	0.89[ASN][1000 genomes]
rs4423865	0.89[ASN][1000 genomes]
rs4693747	0.89[ASN][1000 genomes]
rs4693748	0.89[ASN][1000 genomes]
rs4693749	0.88[ASN][1000 genomes]
rs58201469	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62315465	0.89[ASN][1000 genomes]
rs6834349	0.84[ASN][1000 genomes]
rs72980816	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv879518	chr4:86739805-86778943	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv470049	chr4:86750699-86776488	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86749400-86787600	Weak transcription	Pancreas	Pancrea
2	chr4:86750000-86809200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:86760000-86782600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:86761800-86778800	Weak transcription	Fetal Lung	lung
5	chr4:86764000-86775600	Weak transcription	HSMMtube	muscle
6	chr4:86764000-86780800	Weak transcription	Adipose Nuclei	Adipose
7	chr4:86764200-86774400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:86764200-86775600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:86764200-86775800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:86764400-86778200	Weak transcription	Primary B cells from cord blood	blood
11	chr4:86764600-86775400	Weak transcription	HUVEC	blood vessel
12	chr4:86770000-86783600	Weak transcription	Primary B cells from peripheral blood	blood

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