Variant report

Variant	rs2601833
Chromosome Location	chr4:86776421-86776422
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10034094	0.85[ASN][1000 genomes]
rs11097077	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11947357	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12152604	0.92[ASN][1000 genomes]
rs12152609	0.92[ASN][1000 genomes]
rs1397377	0.92[ASN][1000 genomes]
rs1397378	0.92[ASN][1000 genomes]
rs1473012	0.92[ASN][1000 genomes]
rs1473013	0.92[ASN][1000 genomes]
rs1473014	0.92[ASN][1000 genomes]
rs1473015	0.92[ASN][1000 genomes]
rs1510583	0.88[ASN][1000 genomes]
rs1606017	0.89[ASN][1000 genomes]
rs17011103	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs180778	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2601832	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28739471	1.00[EUR][1000 genomes]
rs28770594	0.92[ASN][1000 genomes]
rs28814882	0.87[ASN][1000 genomes]
rs345326	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs345327	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs345333	0.95[AFR][1000 genomes]
rs345335	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs345339	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs345348	0.89[ASN][1000 genomes]
rs345353	0.86[ASN][1000 genomes]
rs345361	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4420970	0.92[ASN][1000 genomes]
rs4423865	0.92[ASN][1000 genomes]
rs4693747	0.92[ASN][1000 genomes]
rs4693748	0.92[ASN][1000 genomes]
rs4693749	0.90[ASN][1000 genomes]
rs58201469	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62315465	0.92[ASN][1000 genomes]
rs62315498	0.81[ASN][1000 genomes]
rs6834349	0.87[ASN][1000 genomes]
rs6855183	1.00[EUR][1000 genomes]
rs72980816	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879518	chr4:86739805-86778943	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv470049	chr4:86750699-86776488	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86749400-86787600	Weak transcription	Pancreas	Pancrea
2	chr4:86750000-86809200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:86760000-86782600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:86761800-86778800	Weak transcription	Fetal Lung	lung
5	chr4:86764000-86780800	Weak transcription	Adipose Nuclei	Adipose
6	chr4:86764400-86778200	Weak transcription	Primary B cells from cord blood	blood
7	chr4:86770000-86783600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr4:86774400-86780200	Weak transcription	Fetal Brain Male	brain
9	chr4:86774600-86780200	Weak transcription	Fetal Muscle Leg	muscle
10	chr4:86775400-86776600	Genic enhancers	HUVEC	blood vessel
11	chr4:86776000-86780200	Weak transcription	HSMM	muscle
12	chr4:86776000-86790400	Weak transcription	Right Atrium	heart
13	chr4:86776200-86777600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:86776200-86778000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:86776200-86779200	Weak transcription	NHDF-Ad	bronchial
16	chr4:86776200-86780200	Weak transcription	Fetal Heart	heart
17	chr4:86776200-86780200	Weak transcription	Left Ventricle	heart
18	chr4:86776200-86780800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr4:86776200-86780800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr4:86776200-86780800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:86776200-86780800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr4:86776400-86780200	Weak transcription	HSMMtube	muscle

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