Variant report

Variant	rs62315498
Chromosome Location	chr4:86797672-86797673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10034094	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11947357	0.81[ASN][1000 genomes]
rs12152604	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12152609	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12502853	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1397377	0.89[ASN][1000 genomes]
rs1397378	0.89[ASN][1000 genomes]
rs1473012	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1473013	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1473014	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1473015	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1510583	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1606017	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17011103	0.81[ASN][1000 genomes]
rs180778	0.81[ASN][1000 genomes]
rs2601833	0.81[ASN][1000 genomes]
rs2601869	0.90[EUR][1000 genomes]
rs28770594	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28814882	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs345335	0.81[ASN][1000 genomes]
rs345339	0.81[ASN][1000 genomes]
rs345348	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs345353	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4420970	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4423865	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4693747	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4693748	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4693749	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58201469	0.81[ASN][1000 genomes]
rs62315465	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6834349	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72980816	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879519	chr4:86786204-86871282	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3376337	chr4:86795153-86797901	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	esv3448281	chr4:86795328-86797751	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86750000-86809200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:86779800-86800200	Weak transcription	Primary B cells from cord blood	blood
3	chr4:86788000-86804000	Weak transcription	Aorta	Aorta
4	chr4:86788000-86807400	Weak transcription	Left Ventricle	heart
5	chr4:86788000-86810800	Weak transcription	Primary B cells from peripheral blood	blood
6	chr4:86788000-86812400	Weak transcription	HSMM	muscle
7	chr4:86788200-86812000	Weak transcription	Fetal Muscle Leg	muscle
8	chr4:86790800-86835400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:86791000-86803600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:86791000-86804200	Weak transcription	HSMMtube	muscle
11	chr4:86791200-86844400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:86791600-86802000	Weak transcription	NHDF-Ad	bronchial
13	chr4:86794600-86804800	Weak transcription	HUVEC	blood vessel
14	chr4:86794800-86805600	Weak transcription	Pancreas	Pancrea
15	chr4:86797600-86798000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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