Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:90795692-90795991	H1-neurons	neurons:	n/a	n/a
2	POLR2A	chr4:90795661-90796013	H1-neurons	neurons:	n/a	n/a

Variant related genes	Relation type
MMRN1	TF binding region

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10001067	0.98[ASN][1000 genomes]
rs11941110	0.96[ASN][1000 genomes]
rs11941682	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1372508	0.81[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1372509	0.98[ASN][1000 genomes]
rs1372510	0.98[ASN][1000 genomes]
rs1442133	0.97[ASN][1000 genomes]
rs1442134	0.95[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1442136	0.81[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.98[ASN][1000 genomes]
rs1904350	0.97[ASN][1000 genomes]
rs2119785	0.84[ASN][1000 genomes]
rs2289515	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3775475	0.82[ASN][1000 genomes]
rs3775479	0.82[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs4522832	0.98[ASN][1000 genomes]
rs6812192	1.00[CHB][hapmap];0.98[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6812593	0.98[ASN][1000 genomes]
rs6814221	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6814481	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6824979	0.81[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.98[ASN][1000 genomes]
rs7356205	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7693616	0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830400	chr4:90085456-90922432	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1012406	chr4:90167781-91166787	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv949454	chr4:90272120-91156917	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv997700	chr4:90791866-90920021	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11097239	FAM190A	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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