Variant report

Variant	rs2119785
Chromosome Location	chr4:90836519-90836520
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:90831900..90833818-chr4:90835603..90838018,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10001067	0.86[ASN][1000 genomes]
rs11097239	0.84[ASN][1000 genomes]
rs11941110	0.84[ASN][1000 genomes]
rs11941682	0.86[ASN][1000 genomes]
rs1372508	0.86[ASN][1000 genomes]
rs1372509	0.86[ASN][1000 genomes]
rs1372510	0.86[ASN][1000 genomes]
rs1442133	0.84[ASN][1000 genomes]
rs1442134	0.86[ASN][1000 genomes]
rs1442136	0.86[ASN][1000 genomes]
rs1904350	0.86[ASN][1000 genomes]
rs2289515	0.86[ASN][1000 genomes]
rs3775475	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3775479	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4522832	0.86[ASN][1000 genomes]
rs6812192	0.86[ASN][1000 genomes]
rs6812593	0.86[ASN][1000 genomes]
rs6814221	0.85[ASN][1000 genomes]
rs6814481	0.85[ASN][1000 genomes]
rs6824979	0.86[ASN][1000 genomes]
rs7356205	0.86[ASN][1000 genomes]
rs7693616	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830400	chr4:90085456-90922432	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1012406	chr4:90167781-91166787	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv949454	chr4:90272120-91156917	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv997700	chr4:90791866-90920021	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv830005	chr4:90799398-90963420	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1003903	chr4:90831805-90947922	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:90828600-90841200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:90828800-90844200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:90830400-90837600	Strong transcription	HUVEC	blood vessel
4	chr4:90830400-90838800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:90831400-90837400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:90832000-90850400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr4:90832200-90846800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr4:90834800-90839000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:90835600-90837400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr4:90835800-90837200	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr4:90835800-90837400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr4:90835800-90837600	Enhancers	Fetal Brain Male	brain
13	chr4:90836000-90837200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:90836000-90837200	Enhancers	Brain Germinal Matrix	brain
15	chr4:90836000-90837400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr4:90836000-90837400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr4:90836000-90837400	Enhancers	Fetal Kidney	kidney
18	chr4:90836000-90837600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr4:90836200-90837000	Enhancers	Fetal Brain Female	brain
20	chr4:90836200-90837400	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr4:90836200-90837600	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr4:90836400-90836600	Enhancers	H1 Cell Line	embryonic stem cell
23	chr4:90836400-90836800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr4:90836400-90837400	Enhancers	Small Intestine	intestine

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