Variant report

Variant	rs11097305
Chromosome Location	chr4:92119868-92119869
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:92118886..92121028-chr6:31337898..31340855,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000201658	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12509942	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12510717	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13115718	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs13134976	0.89[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17209717	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1919228	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2002254	0.89[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4393965	0.89[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4491986	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs4693267	0.83[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4693268	0.89[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4693269	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4693270	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4693272	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs5011408	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6532283	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7691478	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7696387	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs872669	0.89[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv879559	chr4:91918870-92152678	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv869023	chr4:91940838-92935383	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv2757943	chr4:91946664-92146114	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2759267	chr4:91946664-92146114	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv3448147	chr4:92011533-92275731	Active TSS Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv879564	chr4:92033255-92184080	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv3384271	chr4:92073391-92464275	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:92119600-92120600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:92119600-92120600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:92119600-92120600	Active TSS	Brain Anterior Caudate	brain
4	chr4:92119600-92120600	Active TSS	Brain Cingulate Gyrus	brain
5	chr4:92119600-92120600	Active TSS	Brain Hippocampus Middle	brain
6	chr4:92119600-92120600	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr4:92119800-92120000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr4:92119800-92120000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:92119800-92120000	Enhancers	Liver	Liver
10	chr4:92119800-92120000	Enhancers	Dnd41	blood
11	chr4:92119800-92120400	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr4:92119800-92120400	Active TSS	Ovary	ovary
13	chr4:92119800-92120400	Active TSS	Right Atrium	heart
14	chr4:92119800-92120400	Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr4:92119800-92120600	Active TSS	Adipose Nuclei	Adipose
16	chr4:92119800-92120600	Active TSS	Brain Angular Gyrus	brain
17	chr4:92119800-92120600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr4:92119800-92120600	Active TSS	Duodenum Mucosa	Duodenum
19	chr4:92119800-92120600	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr4:92119800-92120600	Active TSS	A549	lung

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