Variant report

Variant	rs11097320
Chromosome Location	chr4:77202404-77202405
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77068994..77070621-chr4:77200458..77203318,2	K562	blood:

Variant related genes	Relation type
ENSG00000138750	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1036788	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1441911	0.92[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1441912	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1441916	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1530295	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1530296	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs1530297	0.83[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs1530298	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs1969148	0.84[ASN][1000 genomes]
rs1969149	0.84[ASN][1000 genomes]
rs2869872	0.94[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4370157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859658	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs768981	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461559	chr4:77192838-77204500	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594695	chr4:77192838-77204500	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77173800-77215800	Weak transcription	Brain Hippocampus Middle	brain
2	chr4:77186400-77204200	Weak transcription	Aorta	Aorta
3	chr4:77186600-77215000	Weak transcription	Brain Anterior Caudate	brain
4	chr4:77192600-77212200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:77194000-77204200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr4:77194200-77216400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr4:77199800-77203600	Enhancers	Liver	Liver
8	chr4:77199800-77204200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:77200800-77202800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:77200800-77203000	Enhancers	Stomach Mucosa	stomach
11	chr4:77201400-77203000	Enhancers	Adipose Nuclei	Adipose
12	chr4:77201400-77203000	Enhancers	Duodenum Mucosa	Duodenum
13	chr4:77201400-77203000	Enhancers	HepG2	liver
14	chr4:77201400-77203600	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr4:77201400-77204400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:77201400-77205800	Enhancers	Fetal Intestine Large	intestine
17	chr4:77201600-77202600	Enhancers	Fetal Intestine Small	intestine
18	chr4:77201600-77203000	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr4:77201600-77204600	Enhancers	Fetal Heart	heart
20	chr4:77201800-77202600	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr4:77202200-77202800	Weak transcription	Brain Substantia Nigra	brain
22	chr4:77202400-77203600	Weak transcription	Placenta	Placenta
23	chr4:77202400-77203600	Weak transcription	Gastric	stomach
24	chr4:77202400-77204200	Weak transcription	Colonic Mucosa	Colon
25	chr4:77202400-77204200	Weak transcription	Right Atrium	heart
26	chr4:77202400-77204200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr4:77202400-77205000	Weak transcription	Pancreas	Pancrea
28	chr4:77202400-77206200	Weak transcription	Psoas Muscle	Psoas
29	chr4:77202400-77217000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr4:77202400-77221000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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