Variant report

Variant	rs4859658
Chromosome Location	chr4:77199904-77199905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1036788	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11097320	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1441911	0.92[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1441912	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1441916	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1530295	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1530296	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs1530297	0.83[CHB][hapmap];0.85[CHD][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs1530298	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs1969148	0.84[ASN][1000 genomes]
rs1969149	0.84[ASN][1000 genomes]
rs2869872	0.94[CEU][hapmap];0.86[CHB][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4370157	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs768981	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461559	chr4:77192838-77204500	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594695	chr4:77192838-77204500	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77173600-77202000	Weak transcription	Psoas Muscle	Psoas
2	chr4:77173800-77215800	Weak transcription	Brain Hippocampus Middle	brain
3	chr4:77178800-77201200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:77180000-77202000	Weak transcription	Gastric	stomach
5	chr4:77186400-77204200	Weak transcription	Aorta	Aorta
6	chr4:77186600-77215000	Weak transcription	Brain Anterior Caudate	brain
7	chr4:77187600-77202000	Weak transcription	Brain Substantia Nigra	brain
8	chr4:77188000-77202200	Weak transcription	Brain Angular Gyrus	brain
9	chr4:77188200-77202000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr4:77192600-77212200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr4:77193000-77201800	Weak transcription	Left Ventricle	heart
12	chr4:77193000-77202000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr4:77193000-77202200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr4:77194000-77204200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr4:77194200-77216400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr4:77195000-77200200	Enhancers	HepG2	liver
17	chr4:77195800-77200400	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr4:77198200-77201400	Weak transcription	Pancreas	Pancrea
19	chr4:77198200-77201600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr4:77198600-77200400	Enhancers	Adipose Nuclei	Adipose
21	chr4:77198800-77200200	Enhancers	Stomach Mucosa	stomach
22	chr4:77198800-77200400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:77199000-77200200	Enhancers	A549	lung
24	chr4:77199000-77200400	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr4:77199400-77200000	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr4:77199400-77200000	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr4:77199400-77200200	Enhancers	Fetal Intestine Large	intestine
28	chr4:77199400-77200200	Enhancers	Fetal Intestine Small	intestine
29	chr4:77199400-77201400	Weak transcription	Duodenum Mucosa	Duodenum
30	chr4:77199600-77200000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr4:77199600-77200200	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr4:77199600-77201800	Weak transcription	Small Intestine	intestine
33	chr4:77199800-77201400	Weak transcription	Placenta	Placenta
34	chr4:77199800-77203600	Enhancers	Liver	Liver
35	chr4:77199800-77204200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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