Variant report

Variant	rs11097416
Chromosome Location	chr4:95267156-95267157
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs7677656	1.00[AMR][1000 genomes]
rs7680000	1.00[AMR][1000 genomes]
rs7682034	1.00[AMR][1000 genomes]
rs9917887	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003743	chr4:95255957-95469831	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95261400-95271400	Weak transcription	Dnd41	blood
2	chr4:95264400-95268600	Enhancers	Primary hematopoietic stem cells	blood
3	chr4:95264400-95268600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr4:95264600-95267800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:95266400-95267400	Enhancers	K562	blood
6	chr4:95266400-95267800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:95266400-95268200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr4:95266600-95267400	Enhancers	Adipose Nuclei	Adipose
9	chr4:95266800-95267200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:95266800-95271200	Weak transcription	Placenta	Placenta
11	chr4:95267000-95267200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:95267000-95267600	Enhancers	Primary B cells from cord blood	blood
13	chr4:95267000-95268600	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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