Variant report

Variant	rs9917887
Chromosome Location	chr4:95208630-95208631
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10461170	0.80[AFR][1000 genomes]
rs11097416	1.00[AMR][1000 genomes]
rs7677656	1.00[AMR][1000 genomes]
rs7680000	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7682034	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8180329	0.80[AFR][1000 genomes]
rs8180357	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95138800-95214400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:95146000-95214200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
3	chr4:95146200-95214200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:95146200-95214400	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr4:95151400-95214400	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr4:95158200-95225800	Weak transcription	Stomach Mucosa	stomach
7	chr4:95163000-95210200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr4:95167800-95212800	Weak transcription	Esophagus	oesophagus
9	chr4:95168000-95214200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr4:95177000-95214000	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr4:95185200-95226800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr4:95185400-95213000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:95185800-95214400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:95187800-95208800	Strong transcription	Liver	Liver
15	chr4:95189400-95212800	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr4:95189400-95213800	Strong transcription	Dnd41	blood
17	chr4:95189600-95214400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr4:95189800-95211600	Strong transcription	Fetal Thymus	thymus
19	chr4:95189800-95214400	Strong transcription	HSMM	muscle
20	chr4:95190600-95213000	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr4:95190800-95208800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr4:95190800-95211600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr4:95190800-95211800	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr4:95191000-95211200	Strong transcription	Adipose Nuclei	Adipose
25	chr4:95191000-95211600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr4:95191000-95213000	Weak transcription	Aorta	Aorta
27	chr4:95191000-95213200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr4:95192000-95208800	Strong transcription	Placenta	Placenta
29	chr4:95192400-95209600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr4:95194200-95214400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr4:95194200-95215400	Weak transcription	Gastric	stomach
32	chr4:95196400-95210800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr4:95197000-95213600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr4:95197000-95214400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr4:95197200-95209000	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr4:95197200-95211400	Strong transcription	H1 Cell Line	embryonic stem cell
37	chr4:95197400-95208800	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr4:95197400-95209400	Strong transcription	NH-A	brain
39	chr4:95197400-95210000	Strong transcription	Skeletal Muscle Female	skeletal muscle
40	chr4:95197400-95214400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr4:95198200-95208800	Strong transcription	Primary hematopoietic stem cells	blood
42	chr4:95199200-95208800	Strong transcription	Fetal Muscle Trunk	muscle
43	chr4:95199800-95213200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr4:95200000-95208800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr4:95200800-95209600	Weak transcription	Spleen	Spleen
46	chr4:95200800-95213200	Weak transcription	Psoas Muscle	Psoas
47	chr4:95200800-95214000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr4:95201200-95213200	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr4:95201200-95215000	Weak transcription	Lung	lung
50	chr4:95202000-95208800	Strong transcription	Fetal Brain Female	brain

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