Variant report

Variant	rs11097447
Chromosome Location	chr4:95843338-95843339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95840751..95844269-chr4:95852571..95856189,3	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10488912	0.85[CEU][hapmap]
rs11097448	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11930676	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11932930	0.88[EUR][1000 genomes]
rs11939949	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11944292	0.85[CEU][hapmap];0.85[GIH][hapmap]
rs11945215	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11946484	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12510047	0.85[CEU][hapmap]
rs12511697	0.88[EUR][1000 genomes]
rs12511896	0.85[CEU][hapmap]
rs12511962	0.85[CEU][hapmap]
rs12512097	0.82[AMR][1000 genomes]
rs12512679	0.85[CEU][hapmap]
rs1348606	1.00[CEU][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs17022696	0.90[GIH][hapmap]
rs17343504	1.00[ASW][hapmap]
rs17345417	1.00[ASW][hapmap]
rs17401285	0.85[CEU][hapmap]
rs17401773	0.90[GIH][hapmap]
rs17402559	0.90[GIH][hapmap]
rs17428494	0.85[CEU][hapmap]
rs17428501	0.85[CEU][hapmap]
rs17428564	0.85[CEU][hapmap]
rs17428830	0.85[CEU][hapmap]
rs17429175	0.85[CEU][hapmap]
rs17500351	0.85[CEU][hapmap]
rs17500892	0.85[CEU][hapmap];0.85[GIH][hapmap]
rs17500926	0.85[CEU][hapmap]
rs17501107	0.85[CEU][hapmap];0.85[GIH][hapmap]
rs2023836	0.85[CEU][hapmap]
rs2865411	0.85[CEU][hapmap]
rs4623010	0.85[CEU][hapmap]
rs58221294	0.88[EUR][1000 genomes]
rs59346137	0.88[EUR][1000 genomes]
rs59753663	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60017378	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73838611	0.92[EUR][1000 genomes]
rs73838612	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73838615	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7657460	1.00[MEX][hapmap]
rs7698964	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7699554	0.85[CEU][hapmap];0.85[GIH][hapmap]
rs916875	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11097447	TSPAN5	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95816800-95845800	Weak transcription	A549	lung
2	chr4:95831000-95855000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:95838400-95848200	Weak transcription	Ovary	ovary
4	chr4:95839400-95843800	Weak transcription	Thymus	Thymus
5	chr4:95842200-95848400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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